PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003637.1_g000021.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 582aa MW: 62212.5 Da PI: 9.152

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003637.1_g000021.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Rmu_sc0003637.1_g000021.1 73 FICEVCNKGFQREQNLQLHRRGH 95 89*******************88 PP
2	zf-C2H2	12.5	0.00044	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Rmu_sc0003637.1_g000021.1 149 WKCDKCSKRYAVQSDWKAHSKTC 171 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence
MAASSSSLLG IREEDQNLMK QQQHSSSTPT SSTAAAPLAP PPQKKKRNQP GTPNPEAEVI 60 ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKTTKEPK RKVYLCPEPT 120 CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CDKCSKRYAV QSDWKAHSKT CGTREYRCDC 180 GTLFSRRDSF ITHRAFCDAL AQESARHQPN LSSLGCNLYG GTSNTGLALS HHHHQQQVVG 240 PNIDHHHRNN QSTAPADILR LGGGSGNART GQFDHLLSPP SMGSSFRPAQ SSAPFFINQD 300 QSSQQYHHDQ EQLQSKQFHG LMQFSDHQNN NSSSGGNLFN LPFLSNSSNS NNAGGANSTN 360 LLLHPDHQYN SNGGEGGSSL FSGHMMGGGG GDHMSSGNVS SLYSSQVQNN HHGAGAAVSH 420 MSATALLQKA AQMGSTTSSN NTSASLLRSF GSTSSTKSER PPAAASLVPA NLGGIFGGGG 480 ENENNLQDLM NSFAAGGSSS IFGSGSFGSG FHDVASRDEP KLPAVSIVAG SDRLTRDFLG 540 VGQIVRSMSG GQQQTQIEHM SSLDSESNAA PSTQSFGGGG NF

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence

MAASSSSLLG IREEDQNLMK QQQHSSSTPT SSTAAAPLAP PPQKKKRNQP GTPNPEAEVI  60
ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKTTKEPK RKVYLCPEPT  120
CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CDKCSKRYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AQESARHQPN LSSLGCNLYG GTSNTGLALS HHHHQQQVVG  240
PNIDHHHRNN QSTAPADILR LGGGSGNART GQFDHLLSPP SMGSSFRPAQ SSAPFFINQD  300
QSSQQYHHDQ EQLQSKQFHG LMQFSDHQNN NSSSGGNLFN LPFLSNSSNS NNAGGANSTN  360
LLLHPDHQYN SNGGEGGSSL FSGHMMGGGG GDHMSSGNVS SLYSSQVQNN HHGAGAAVSH  420
MSATALLQKA AQMGSTTSSN NTSASLLRSF GSTSSTKSER PPAAASLVPA NLGGIFGGGG  480
ENENNLQDLM NSFAAGGSSS IFGSGSFGSG FHDVASRDEP KLPAVSIVAG SDRLTRDFLG  540
VGQIVRSMSG GQQQTQIEHM SSLDSESNAA PSTQSFGGGG NF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-116	C2H2 family protein