PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003637.1_g000020.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 579aa MW: 62010.6 Da PI: 9.6703

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003637.1_g000020.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Rmu_sc0003637.1_g000020.1 56 FICEVCNKGFQREQNLQLHRRGH 78 89*******************88 PP
2	zf-C2H2	13.1	0.00028	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Rmu_sc0003637.1_g000020.1 132 WKCEKCSKRYAVQSDWKAHSKTC 154 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MSSLQQPSPA SSTAPISTTT PTAPPPKKRR NQPGNPNPDA EVIALSPKTL MATNRFICEV 60 CNKGFQREQN LQLHRRGHNL PWKLKQKTNK EPKRKVYLCP EPTCVHHDPS RALGDLTGIK 120 KHFSRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR DSFITHRAFC 180 DALAQESARH PSSLSAMATS SHLYPGNNQM MSLGLSQMGG GSSLTPNNML RLGTNGAGGA 240 AKFEHLMNPS SFGQAQPIPN SSTTFFNQGF QDQQHSLNGP YAANKSLHGL MQLPDLQSNT 300 PSNNSPSSTT TAAGSLFNLG FFSSNNSDHH QFSDGNGGTQ GTTLFPNGMA DHIGSGLPSS 360 LFGNSLQHEN MNGAHMSATA LLQKAAQMGS TTSTESSSLL RGLAGSTSSS TRAVAKSISG 420 RQLVSSNSTI GGVSFSRESS SGGEHEQHMR SQQQHVENEN HHLQGLIMNS LTNGNSSAAS 480 IFGSAGDHHN NFGTHGFANG STTRVSLMDQ QQHNNTNFSN VDEAKLTLDF LGVGGIVRNM 540 GGGGGGGYEH RGINMSSLDP ELKSSQQPSQ PYGGTSALQ

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MSSLQQPSPA SSTAPISTTT PTAPPPKKRR NQPGNPNPDA EVIALSPKTL MATNRFICEV  60
CNKGFQREQN LQLHRRGHNL PWKLKQKTNK EPKRKVYLCP EPTCVHHDPS RALGDLTGIK  120
KHFSRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR DSFITHRAFC  180
DALAQESARH PSSLSAMATS SHLYPGNNQM MSLGLSQMGG GSSLTPNNML RLGTNGAGGA  240
AKFEHLMNPS SFGQAQPIPN SSTTFFNQGF QDQQHSLNGP YAANKSLHGL MQLPDLQSNT  300
PSNNSPSSTT TAAGSLFNLG FFSSNNSDHH QFSDGNGGTQ GTTLFPNGMA DHIGSGLPSS  360
LFGNSLQHEN MNGAHMSATA LLQKAAQMGS TTSTESSSLL RGLAGSTSSS TRAVAKSISG  420
RQLVSSNSTI GGVSFSRESS SGGEHEQHMR SQQQHVENEN HHLQGLIMNS LTNGNSSAAS  480
IFGSAGDHHN NFGTHGFANG STTRVSLMDQ QQHNNTNFSN VDEAKLTLDF LGVGGIVRNM  540
GGGGGGGYEH RGINMSSLDP ELKSSQQPSQ PYGGTSALQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-124	C2H2 family protein