PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0003550.1_g000012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | FAR1 | ||||||||
Protein Properties | Length: 493aa MW: 54953 Da PI: 8.2058 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87.2 | 2.4e-27 | 112 | 200 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fYn+YA +vGF++r++ ++s+ +g+++ rt+vC+keg+r +k++ +k+ r+r+ tr+gCka++ +kk ++g+w+v+k+++eH Rmu_sc0003550.1_g000012.1 112 FYNAYALRVGFRTRVNDLSRSRVDGSVIARTLVCNKEGYRVADKRD-RKSVRPRPPTRVGCKAMISMKKLSNGNWVVAKFVKEH 194 9*****************************************9999.99*********************************** PP FAR1 86 nHelap 91 H+l+p Rmu_sc0003550.1_g000012.1 195 AHSLTP 200 ***975 PP | |||||||
2 | FAR1 | 91.4 | 1.2e-28 | 380 | 467 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fYn Y+ ++GF++r+++ ++sk++g+i+ rtfvCskeg+r++++++ +k+ ++ra tr+gC a+l +kk + gkw+vtk+ +eH Rmu_sc0003550.1_g000012.1 380 FYNVYGLRMGFNTRMNYLSRSKHDGTIIARTFVCSKEGYRKPDRRD-KKTVNPRAPTRVGCMAMLSIKKLNIGKWVVTKFIKEH 462 9******************************************999.9************************************ PP FAR1 86 nHela 90 nH+l Rmu_sc0003550.1_g000012.1 463 NHALI 467 **995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence |
MELGGAAESK GESFMISKAS KNTTFPSLSL TVKEGKESKT VKHMTQNGAS DDLADVELRL 60 NNDDAILGTS VGEVSNIGQT EQVGQNSASL EVEADEPYVG QEFESEAAAH AFYNAYALRV 120 GFRTRVNDLS RSRVDGSVIA RTLVCNKEGY RVADKRDRKS VRPRPPTRVG CKAMISMKKL 180 SNGNWVVAKF VKEHAHSLTP GKSENGLNDE SSDEQIKIKE LTQQLMVERK RSASYRKIID 240 LLFNHIDDHT QHLSQKILRV NDILKDIASS EAKGRSIGTD QGKPVIFIAE FTYDSLNLHI 300 FAVDSVLDIN VNEEVSTGST DTEFKHSNDG ALVGTSLQKI LWVVQNDERT QNSSKDGSVV 360 EVDEPYVGQE FDTEVNAQAF YNVYGLRMGF NTRMNYLSRS KHDGTIIART FVCSKEGYRK 420 PDRRDKKTVN PRAPTRVGCM AMLSIKKLNI GKWVVTKFIK EHNHALIASK RPKGLIEDQI 480 PVSYCDILYS FLT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-56 | FAR1 family protein |