PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003526.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 454aa MW: 52068 Da PI: 6.3021

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003526.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.5	2.3e-38	80	180	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 aCaaCk++rrkC+++C+lapyfp +qpk f+n+hklFG+ n+lk+lk++++ + +am+s++y+A++r + PvyG+ +vi++lq Rmu_sc0003526.1_g000011.1 80 ACAACKYQRRKCTPECPLAPYFPPDQPKMFQNAHKLFGVCNILKILKSVDPCLKFEAMKSIIYQANIRDKFPVYGCWEVIWQLQ 163 7********************************************************************************* PP DUF260 85 qqleqlkaelallkeel 101 q++ +++el+ ++++l Rmu_sc0003526.1_g000011.1 164 YQIMVAEQELQNVHKQL 180 **********99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MLLLIPTFFF TITIFLTSFF FLILLLHHYR HLCNIHLSNS FLSFRWLHLP HWFEPPPQRS 60 RRHLIGSDNI MTLKGATSQA CAACKYQRRK CTPECPLAPY FPPDQPKMFQ NAHKLFGVCN 120 ILKILKSVDP CLKFEAMKSI IYQANIRDKF PVYGCWEVIW QLQYQIMVAE QELQNVHKQL 180 ALYRQHHYQQ QQQISAMPDY VTSQLELGMA PPNNNNNTTS LLHHSTPQSY DNNNTAIPHA 240 LPVTQQQQQQ QQQPPYSHRS DNAYTSAYDI DSKENITGEN LLLHHSTPQS YDNNNTAIPH 300 ALPVTQQQQQ QQQQQQQPPY SHRSGNAYTS AYDIDSKENI TAENVLWAQN PFTNNNSSIN 360 ENNDNAETVQ SQFGVSQTLA IESEDVQDYD ELHPFFDTID DRQSYIDSKE AYDSSSSEES 420 FKGTTQLSMD HAAENTLKSA AACFSLTSVK LSVS

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MLLLIPTFFF TITIFLTSFF FLILLLHHYR HLCNIHLSNS FLSFRWLHLP HWFEPPPQRS  60
RRHLIGSDNI MTLKGATSQA CAACKYQRRK CTPECPLAPY FPPDQPKMFQ NAHKLFGVCN  120
ILKILKSVDP CLKFEAMKSI IYQANIRDKF PVYGCWEVIW QLQYQIMVAE QELQNVHKQL  180
ALYRQHHYQQ QQQISAMPDY VTSQLELGMA PPNNNNNTTS LLHHSTPQSY DNNNTAIPHA  240
LPVTQQQQQQ QQQPPYSHRS DNAYTSAYDI DSKENITGEN LLLHHSTPQS YDNNNTAIPH  300
ALPVTQQQQQ QQQQQQQPPY SHRSGNAYTS AYDIDSKENI TAENVLWAQN PFTNNNSSIN  360
ENNDNAETVQ SQFGVSQTLA IESEDVQDYD ELHPFFDTID DRQSYIDSKE AYDSSSSEES  420
FKGTTQLSMD HAAENTLKSA AACFSLTSVK LSVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-43	LBD family protein