PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0003507.1_g000023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | C2H2 | ||||||||
Protein Properties | Length: 534aa MW: 57502.9 Da PI: 8.8901 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.3e-05 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Rmu_sc0003507.1_g000023.1 90 FICEICNKGFQRDQNLQLHRRGH 112 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.0004 | 166 | 188 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Rmu_sc0003507.1_g000023.1 166 WKCEKCSKKYAVQSDWKAHSKTC 188 58*****************9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence |
MKALQFQQQQ QVDENMSNLT SASGDQASVS SGNRSTEIGT SNFSQQYFPP PPPHANSQGV 60 KRKRNQPGNP DPDAEVIALS PKTLMATNRF ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ 120 RTSKEVRKKV YVCPEASCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCEK CSKKYAVQSD 180 WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAEE SARAINPTTL QTLSSPPPLQ 240 PQPQNHMNLM GGGPHINFNP HGHDLHAYSA FMKKEQNDHQ QISSFSSTNS LLPPWLASGP 300 PPSATSIFSG NQDHHHHHHH DFQQNLELGP NPNPSLGPTL PQFQVPGAAA ALSSPPHMSA 360 TALLQKAAQM GATMSSSSTS SGSVSVAAGV MARAHLSDFG GQVSAAGNGI GGGAGGGSVH 420 HQQQQQQQAS SLLHDMMNSL SSGTGFEGTS FEDAFGGILG NSKSKDGSRS GGADENGVVG 480 GGEGLTRDFL GLKAMSHSDM MLNIAGLGNC VSNNNSSSTR DLQNQVPQKP NWQG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 129 | KLKQRTSKEVRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-114 | C2H2 family protein |