PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003507.1_g000017.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 327aa    MW: 36648.8 Da    PI: 5.6103
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003507.1_g000017.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.41.3e-39351341100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l+++++e+am+++++++++ra+dPv G++++i++lq
  Rmu_sc0003507.1_g000017.1  35 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKHLDHHDKEEAMRTIIFQSDVRASDPVGGCYRIIQELQ 118
                                7*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallkee 100
                                + +e  kael+ + ++
  Rmu_sc0003507.1_g000017.1 119 RLIEYNKAELDIVLHQ 134
                                **********988776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MSITSGSLVT RTSSPTTPNS SSSSSSTKGN GNTQACAACK YQRRKCAPDC ILAPYFPHDR  60
QRQFLNAHKL FGVSNITKII KHLDHHDKEE AMRTIIFQSD VRASDPVGGC YRIIQELQRL  120
IEYNKAELDI VLHQLAICRA QAQQQQQPIM QQIPEVGDTT CADQMISVDP LSLYGNPMHF  180
HYLQQQPNVQ VTGQQDQGAP YLFVQNTNGN NGHQQQHMVP EDMNMWAMQD SMSSLHIKHG  240
MNAGDCEDIK PFVDIACDDD QRNHEIKFQP DAIGDQSDEA LLKIEDGNLK EDQQSESAAE  300
QVHHHYQDHG DLKGEATLFM TLTNCSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-49LBD family protein