PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003332.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 873aa    MW: 96200.5 Da    PI: 8.1032
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003332.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.2e-1874120148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                +g WT++Ede l +av+++ g++Wk+Ia++++  R++ qc +rwqk+l
  Rmu_sc0003332.1_g000004.1  74 KGGWTPQEDETLRNAVAKFKGKNWKKIAQYFP-DRSEVQCLHRWQKVL 120
                                688*****************************.************986 PP
2Myb_DNA-binding56.37.2e-18201247148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                +g WT++Ede l +av+++ g++Wk+Ia++++  R++ qc +rwqk+l
  Rmu_sc0003332.1_g000004.1 201 KGGWTPQEDETLRNAVAKFKGKNWKKIAQYFP-DRSEVQCLHRWQKVL 247
                                688*****************************.************986 PP
3Myb_DNA-binding61.32.1e-19253299148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                +g+WT+eEd+++v++v+++G+  W++I++ ++ gR +kqc++rw+++l
  Rmu_sc0003332.1_g000004.1 253 KGPWTQEEDDKIVELVAKYGPTKWSLISKSLP-GRIGKQCRERWHNHL 299
                                79******************************.*************97 PP
4Myb_DNA-binding49.87.9e-16305348146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                r +WT  E++ l +a++++G++ W+ Ia+ ++ gRt++ +k++w++
  Rmu_sc0003332.1_g000004.1 305 REAWTLVEELALMHAHRMHGNK-WAEIAKALP-GRTDNAIKNHWNS 348
                                789*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    
MSFNLIPSTS SQPERRSEVP IEECCLVNKQ STAASSSDSE GSESPVLKSP GIGSSPAEAS  60
PVNKRITGPI RRAKGGWTPQ EDETLRNAVA KFKGKNWKKI AQYFPDRSEV QCLHRWQKVL  120
NPELVKGPWT QEEDDKIVEL QRRSEVPIEE CCLVNKQSTA ASSSDSEGSE SPVLKSPGIG  180
SSPAEASPVN KRITGPIRRA KGGWTPQEDE TLRNAVAKFK GKNWKKIAQY FPDRSEVQCL  240
HRWQKVLNPE LVKGPWTQEE DDKIVELVAK YGPTKWSLIS KSLPGRIGKQ CRERWHNHLN  300
PDIKREAWTL VEELALMHAH RMHGNKWAEI AKALPGRTDN AIKNHWNSSL KKKLDFYLAT  360
GQLPPPPKNS YPNVPKETNR SIATRRLLVG SDKGSDSTAR TLPGNADTRK IDEDGKDHQL  420
QSSEPLNMDM CAFYLATGQL PPVPKNSFPN DAKETNRSIA TRRLLVGSDK GSDSTARTLP  480
GNADTRKIDE DGKDHQLQSS EPLDMDMCAF YLATGQLPPV PKNSFPNDAK ETNRSTATTR  540
LLVDSDKGSD STAHTLSVNA DTCKIDDNGK DQLQSSSSQD MCGSSSILPD EHADSEVIEC  600
RLRLSLTDPS CSNSESVPKF TNFAVNSKLQ IENSGINSEP KYENSEFNSQ KVEDKVDSAT  660
VPVQTPSYGS LYYEPPPLDS SIPLDSGLPN LHCFQHDYKS SPNWSPISFF TPPTAKSSGL  720
YNRSPESILK IAAKTFPNTP SILRKRKSAQ GHLPPNKLRI VDSESVRETL IVPEEQERNK  780
NSVELSGSQD VSLCDSPTSQ GINTTGPNGK AFNASPPYRL RSRRTAVFKS VEKQLQFTCE  840
EEYAGNSKPV GLSANGGTAV TKDCSHATKM GVT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-110MYB family protein