PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0003275.1_g000065.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | YABBY | ||||||||
Protein Properties | Length: 186aa MW: 20722.5 Da PI: 8.4131 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 219.5 | 1e-67 | 6 | 160 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnve 87 + +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l++++ ++++++ ++ ++s + Rmu_sc0003275.1_g000065.1 6 DAVPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSCQDV--------QAQNQNAQNYRIDSGSS 81 5679************************************************9999995........44555555555555544 PP YABBY 88 keesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ +++ ++ ++ +++++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Rmu_sc0003275.1_g000065.1 82 SKGNKKIATRD-SIAV---HHATEERGVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 160 44444444333.2233...333344469*****************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence |
MSSCIDAVPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 CQDVQAQNQN AQNYRIDSGS SSKGNKKIAT RDSIAVHHAT EERGVNRPPE KRQRVPSAYN 120 QFIKEEIQRI KANNPDISHR EAFSTAAKNW AHFPHIHFGL MLETNNQAKL DNGSEKHLLS 180 RAALLK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.1 | 2e-87 | YABBY family protein |