PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0003245.1_g000004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB_related | ||||||||
Protein Properties | Length: 250aa MW: 27342.7 Da PI: 9.8872 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.9 | 1.1e-13 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Rmu_sc0003245.1_g000004.1 70 RESWTEQEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 114 789*****************77.*********.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence |
MVSVNPNPAP QGFYLFDPTN MGLPGLNSVP PPTTPSTTTT TTSSAPQNAA SLAEDLSKKI 60 RKPYTITKSR ESWTEQEHDK FLEALQLFDR DWKKIEAFIG SKTVIQIRSH AQKYFLKVQK 120 KGTSEHVPPP RPKRKATHPY PQKAPKSAPV ASQVVVPFES SSALLEHGYA YQPDSSFVLG 180 TPVTSASLSS WSHSYVPPVN ASQVTKDDGK LAGSTDAQNS CYSSSNESKP TTWLMGETVG 240 RACHRQPQRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01280.2 | 1e-69 | MYB_related family protein |