PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003238.1_g000014.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 465aa MW: 53088.2 Da PI: 4.6458

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003238.1_g000014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	76.9	4.8e-24	16	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpk......kvkaeek......ewyfFskrdkkyat 70 l pG+rF P +eel+ +yL++kv+g++++ e+ i + ++y + ePwd+ k + ++yfF++r+k + + Rmu_sc0003238.1_g000014.1 16 LLPGYRFCPLEEELILRYLCPKVKGEEVPGEDYlIFNSNLYgEQEPWDIWDmykerrK-----NdlrfnkDLYFFTQRKKMTVN 94 579**********************99988879999998356*642333221.....123333377******** PP NAM 71 gkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +rk r++ sg+Wk k+v++ +g +vg +k +++ k + + ++ +W+m e++l Rmu_sc0003238.1_g000014.1 95 ASRKGRSIGSGTWKGGDAAKNVYA-SGIVVGYRKRFTYEK--KGSEQHGRWIMLEFEL 149 ********************.999*****984..4444689*****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MDIHEDGNEL HDEHQLLPGY RFCPLEEELI LRYLCPKVKG EEVPGEDYLI FNSNLYGEQE 60 PWDIWDMYKE RRKNDLRFNK DLYFFTQRKK MTVNASRKGR SIGSGTWKGG DAAKNVYASG 120 IVVGYRKRFT YEKKGSEQHG RWIMLEFELD HSQVGMLDQQ EAQKYVLCIL RKNEGSKEKR 180 KRVDDDDREK LATGDDVPDD CQALDGYKNM KQEESEIKQG EEDQLMHAIT GDVRDAGPSL 240 SSELQGEENC WVQYLSPILL VHDDYVLPPY ADALQWEEEN YLGKQSTVPG FEDNVQPFLV 300 ADHELQRKAE NCGKQCLEHR PLVPPFTADG EIMIHMLGAE NYLSKQCPVQ CIYCDFDVQP 360 FAAADELSNI YMLGEEHPVP RVAEQEGSSL KEKQNASMVS TSTDHQPDMV ASKSTSTDHH 420 RADDPIGSND VDEGLAAGTH GFKYNPWILS FSEELLRGAR SKSKV

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MDIHEDGNEL HDEHQLLPGY RFCPLEEELI LRYLCPKVKG EEVPGEDYLI FNSNLYGEQE  60
PWDIWDMYKE RRKNDLRFNK DLYFFTQRKK MTVNASRKGR SIGSGTWKGG DAAKNVYASG  120
IVVGYRKRFT YEKKGSEQHG RWIMLEFELD HSQVGMLDQQ EAQKYVLCIL RKNEGSKEKR  180
KRVDDDDREK LATGDDVPDD CQALDGYKNM KQEESEIKQG EEDQLMHAIT GDVRDAGPSL  240
SSELQGEENC WVQYLSPILL VHDDYVLPPY ADALQWEEEN YLGKQSTVPG FEDNVQPFLV  300
ADHELQRKAE NCGKQCLEHR PLVPPFTADG EIMIHMLGAE NYLSKQCPVQ CIYCDFDVQP  360
FAAADELSNI YMLGEEHPVP RVAEQEGSSL KEKQNASMVS TSTDHQPDMV ASKSTSTDHH  420
RADDPIGSND VDEGLAAGTH GFKYNPWILS FSEELLRGAR SKSKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	9e-17	NAC family protein