PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003226.1_g000090.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 403aa MW: 45334.6 Da PI: 9.4597

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003226.1_g000090.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.4	5.3e-32	137	193	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkv +s d++++ei+Y+geHnh+ Rmu_sc0003226.1_g000090.1 137 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVVCSV-DGQITEIIYKGEHNHQ 193 8**************************************.*************8 PP
2	WRKY	107.9	4.8e-34	280	338	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+dpk+v++tYeg+Hnh+ Rmu_sc0003226.1_g000090.1 280 LDDGYRWRKYGQKVVKGNPYPRSYYKCTFQGCNVRKHVERAATDPKAVITTYEGKHNHD 338 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MAIKLTTQKA IHHTNVDVST LTLTLVRFRC SHLPRSLRPI SSFPSPSSLE LNRTRSWWKP 60 SELKKPVSRS WWKYCSTGTG TGMEEVFQVG WKEEIGTSPK ELSDISHSEQ RSEPSSLTVD 120 KPESAKLHKL GGPKPNDDGY NWRKYGQKQV KGSEFPRSYY KCTHPSCPVK KKVVCSVDGQ 180 ITEIIYKGEH NHQRPQSKRP KDSGNQNGNV QGQESSQAIS GTSDSEEVGD AETKVEEKDE 240 DEPSAKRRNM EVRHSEPASS HRTVTEPRII VQTTSEVDLL DDGYRWRKYG QKVVKGNPYP 300 RSYYKCTFQG CNVRKHVERA ATDPKAVITT YEGKHNHDVP ASKSGSHYTA NNNASNLRSG 360 NPGTEKHASV SIVLCFSQPN LIFPRSSEIS QVILSESVFH LWP

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MAIKLTTQKA IHHTNVDVST LTLTLVRFRC SHLPRSLRPI SSFPSPSSLE LNRTRSWWKP  60
SELKKPVSRS WWKYCSTGTG TGMEEVFQVG WKEEIGTSPK ELSDISHSEQ RSEPSSLTVD  120
KPESAKLHKL GGPKPNDDGY NWRKYGQKQV KGSEFPRSYY KCTHPSCPVK KKVVCSVDGQ  180
ITEIIYKGEH NHQRPQSKRP KDSGNQNGNV QGQESSQAIS GTSDSEEVGD AETKVEEKDE  240
DEPSAKRRNM EVRHSEPASS HRTVTEPRII VQTTSEVDLL DDGYRWRKYG QKVVKGNPYP  300
RSYYKCTFQG CNVRKHVERA ATDPKAVITT YEGKHNHDVP ASKSGSHYTA NNNASNLRSG  360
NPGTEKHASV SIVLCFSQPN LIFPRSSEIS QVILSESVFH LWP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03340.1	1e-106	WRKY family protein