PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003226.1_g000022.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 309aa MW: 34970.5 Da PI: 8.6362

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003226.1_g000022.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59	1.5e-18	79	183	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvk 69 +fY ++ GFsvrksks k r g+i +r ++Cskeg r+ ++ k +e+ +r++tr+gC a+l+v Rmu_sc0003226.1_g000022.1 79 RFYAYHSIAKGFSVRKSKSDKD-RGGQIFRRSLCCSKEGWRKVQNPKkrtkvfgsvssqgknKEQPGIKRMVTRCGCPARLTVL 161 59999999********9998.8888********99977766689**998765555556***********9 PP FAR1 70 kek.dgkwevtkleleHnHela 90 + +g ++v++++++HnH+l+ Rmu_sc0003226.1_g000022.1 162 CCNkTGSFYVSQFDTDHNHALV 183 9888**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MDNDTDQHGL RFSEEQYHNS GGFSNGEGGF FSDESRGETF TFGLDESTDC LCYKGKKYED 60 LQFSDMNGIF FRSVEDVERF YAYHSIAKGF SVRKSKSDKD RGGQIFRRSL CCSKEGWRKV 120 QNPKKRTKVF GSVSSQGKNK EQPGIKRMVT RCGCPARLTV LCCNKTGSFY VSQFDTDHNH 180 ALVRKEMVHF LRSNMMVGGH ASAQVSSMKK GSVLTCRAYK LLVHQAGGYE RATCKSVLDS 240 KCLVDYNNFG DVLIMDSTYK TNIYGKPLVI FVGVDNHRET VSFGCALLVD ETEETYKWVL 300 STFIDYGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-29	FAR1 family protein