PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0003187.1_g000005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | GRAS | ||||||||
Protein Properties | Length: 778aa MW: 87450.6 Da PI: 6.0002 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 231.9 | 2.9e-71 | 288 | 630 | 1 | 351 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl 83 l +lLl++Ae v +++e+a++lL +++ la +g+p+q+++ yf+eAL++r+ + +ly + + + ++ + + a+ + Rmu_sc0003187.1_g000005.1 288 LAHLLLAAAEKVGYQQFERASRLLLQVEWLACFKGTPVQKVVCYFAEALRERIEK-EIGLYTSKgNEEMSHYVHGLGTNLAFIA 370 579***************************************************9.5555655514444443444555555556 PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLa 166 ++ P++ + +++a q++ e v++e+r+H iD++i G+QW L++aLa+R+e p l iT+vg k++++etgerL+ Rmu_sc0003187.1_g000005.1 371 CHQEVPFHPVLQFAAIQTMIENVANESRIHLIDLEIRFGTQWTGLMEALAEREECPVeLLTITAVGV---RGKQNIKETGERLT 451 77778************************************************7666489******9...589*********** PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249 ++A +l++pf+f+ +++++++d++ + ++ + + al+V l l ++ +++ +le+ +++++++++P ++vv+e ea+hn Rmu_sc0003187.1_g000005.1 452 SVAMSLNLPFQFKEVIVSDMQDINDRLFDEIEdDQALVVYAPLVLRTMIARPRCLEN----LMRVMRNINPSLMVVIEVEANHN 531 ***********************999996555499*********************9....*********************** PP GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 s+sF++rf++al y+sa+fd++e+ + +e + r+ +E ll++ i+n+va+eg++r++r ++ Wr+ + ++ + ++++s+k Rmu_sc0003187.1_g000005.1 532 SPSFVNRFIDALFYHSAFFDCVETCM-TEGKSRVIME-GLLREGIRNIVAAEGSDRVARSVKMDVWRAFFASFRMVEMSFSNKS 613 ************************97.3445555555.56******************************************** PP GRAS 334 akqaklllrkvksdgyrv 351 qa+ + +kv + +++ Rmu_sc0003187.1_g000005.1 614 LYQANEIAKKVIRR-FSL 630 *****999988744.655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 778 aa Download sequence |
MANAFFSFSP FDFEIQGGLS PPQLEDSDKE DTLMLNVRKG DHLFGLEDQL GEMNAPSSEH 60 GFCQDSKAKK GVVISHLSKD QSQHDVLDHQ QQKQSKPNFF ILDNFNFETV SSQQGFYHAN 120 KAGKDHQHHH HQEQQQYSKS SSSNLENFSS FDFTFPSGQV TQPVDDGARF THSQIGGSDI 180 IETSKKMQPP QSSLATLELL NSYGSAFKKL RGERQRSSNI VKGKEIDQNS SYVVSGKQKL 240 SIEEVMRVAG ARFVQFSSQG YEDFYMSMHP FGYALSGLCE EETKDVELAH LLLAAAEKVG 300 YQQFERASRL LLQVEWLACF KGTPVQKVVC YFAEALRERI EKEIGLYTSK GNEEMSHYVH 360 GLGTNLAFIA CHQEVPFHPV LQFAAIQTMI ENVANESRIH LIDLEIRFGT QWTGLMEALA 420 EREECPVELL TITAVGVRGK QNIKETGERL TSVAMSLNLP FQFKEVIVSD MQDINDRLFD 480 EIEDDQALVV YAPLVLRTMI ARPRCLENLM RVMRNINPSL MVVIEVEANH NSPSFVNRFI 540 DALFYHSAFF DCVETCMTEG KSRVIMEGLL REGIRNIVAA EGSDRVARSV KMDVWRAFFA 600 SFRMVEMSFS NKSLYQANEI AKKVIRRFSL HSPSSDMSTK QGGSQQPTTE GNNEPIIQPA 660 GTGNSSNTTQ VVGGEIFLDG FVPIPIPPNA SIEEKLAIFQ QNNASYYEKT SKGFAEGRRK 720 IDDLVNQVQT LGQGLQQTQG RLDSMSQRSQ VNHDQLVTLI NDQAAQNKHI HNIKASLR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 5e-39 | GRAS family protein |