PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003179.1_g000029.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 597aa    MW: 66984.7 Da    PI: 4.8803
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003179.1_g000029.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.92.7e-1120105393
                                EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                         B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                 + ++s + ++  lv+p +f+ e+ +g+  ++ +++le ++  +W+v++  +  ++++ l++GW eFv +n L++g ++v+   
  Rmu_sc0003179.1_g000029.1  20 IQVVRSPSKNTESLVIPPPFVIEFmNGDRCRQGKIKLEGLEQCQWRVEI--NTDGRGVELGEGWAEFVGEN-LEDGWMLVLL-- 98 
                                4566788888888********999955555666****************..999999***********986.9999999988.. PP

                                SSSEE..E CS
                         B3  86 grsefelv 93 
                                 r e+ ++
  Rmu_sc0003179.1_g000029.1  99 -RYEGAMT 105
                                .3233334 PP
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    
MASGSGSHRP MQLGRQPCFI QVVRSPSKNT ESLVIPPPFV IEFMNGDRCR QGKIKLEGLE  60
QCQWRVEINT DGRGVELGEG WAEFVGENLE DGWMLVLLRY EGAMTFSARR YGRSGALMVT  120
APRGRQTEET PRGVRGIYPS FAQLVIRGGM NSEVLEIPAG IFRGGSSRTT IESKVWLNNM  180
NWGMSCNARI KVSEDGGVIK GGWDRWVSAN IVRVCKWCIV DCNRSKNEAT VMVFLQCGGV  240
MSNVAMMNAV TIGDAMYVDS CDEEYLNDSE EEEEDLPDEG EAGHMVQFPI PQTVIRVGKK  300
YGQLPTEYAK QYFPGVGSRQ VVVRTGDGQS WEVSFLKSNE TYRFSGGFVE LRKEYGLKVE  360
NKCKGDVMLQ LLQVSARHAF IKARDQARNV RVGPKFHFPA SGTRKARTRK EWAGPSEESE  420
TDSEESDVSG SDGDDTSWIS WFCNLRGNEF FCEVDDDYIQ DDFNLCGLSS QVPYYDYALD  480
LILDVESSHG DMFTEEQNEL IESAAEMLYG LIHVRYILTS KGMAAMLDKY KNYDFGRCPR  540
VYCCGQPCLP VGQSDIPRSS TVKIYCPKCE DIYYPRSKYQ GSILCIYNSA FETAGCV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1404411RKARTRKE