PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003165.1_g000008.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 354aa MW: 39311.2 Da PI: 6.5739

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003165.1_g000008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.2e-14	170	216	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Rmu_sc0003165.1_g000008.1 170 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 216 79***********************9.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MMCGKKEDQG ECSQSHHHQQ VQNFQEQLLL QQQQQMMQQQ QQNHNELYGR GLIFPHDQAP 60 PPILQPWTLP PIHAFNPAHF PVRGDNNIDP FLVPPPAPSS SYASFFNRRG APSLQFTYDG 120 SASDHHHLRI LSEALGPMVQ PGSAPFGLQA ELGKLTAQEI MDAKALAASK SHSEAERRRR 180 ERINNHLAKL RSLLPSTTKT DKASLLAEVI QHVKELKRQT SVIAETSPVP TETDELIVDD 240 ASDEEGKFVI KASLCCEDRS DLLPDLIKTL KALRLRTLKA EITTLGGRVK NVLFITGEED 300 SSSSEEQQQQ QYCISSIQEA LKAVMEKSGG GDDSNSSGSV KRQRTTNNTN INIL

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MMCGKKEDQG ECSQSHHHQQ VQNFQEQLLL QQQQQMMQQQ QQNHNELYGR GLIFPHDQAP  60
PPILQPWTLP PIHAFNPAHF PVRGDNNIDP FLVPPPAPSS SYASFFNRRG APSLQFTYDG  120
SASDHHHLRI LSEALGPMVQ PGSAPFGLQA ELGKLTAQEI MDAKALAASK SHSEAERRRR  180
ERINNHLAKL RSLLPSTTKT DKASLLAEVI QHVKELKRQT SVIAETSPVP TETDELIVDD  240
ASDEEGKFVI KASLCCEDRS DLLPDLIKTL KALRLRTLKA EITTLGGRVK NVLFITGEED  300
SSSSEEQQQQ QYCISSIQEA LKAVMEKSGG GDDSNSSGSV KRQRTTNNTN INIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	181	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-81	bHLH family protein