PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003153.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 554aa    MW: 63430.2 Da    PI: 9.7244
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003153.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.89.2e-14341199100
                                HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                         B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                                d+++   l +p +f++++g++   s  +t++ + g +W v l  +++ g+++++kGW +F k   L  +D +vF ++g+s+f  
  Rmu_sc0003153.1_g000005.1  34 DTSRDVKLGIPEDFVSKYGKD--LSNSVTFRLPCGSEWVVGL--TRYNGEVWFEKGWPDFSKFYSLGYNDLLVFGYEGKSRF-- 111
                                555566799*********977..8889***************..*********************************98999.. PP

                                EEEEE-SS CS
                         B3  93 vvkvfrks 100
                                 v++f+ks
  Rmu_sc0003153.1_g000005.1 112 QVSIFDKS 119
                                *****985 PP
2B350.73.3e-16247327687
                                ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                         B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                ++++++++++l+lp  f+++h +k+++   ++l  + g ++W+v l+y++k +r+ + +GW eF ++n++k+ D++vF+l+++
  Rmu_sc0003153.1_g000005.1 247 IRPSYFNQNLLWLPSVFVRTHLMKQPS--SVILWVPGGsKTWTVALNYQQKARRVSFNTGWIEFLRDNNVKVWDVCVFMLIDE 327
                                678899999************767555..5888888777****************************************9873 PP
3B340.74.2e-13462551497
                                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                v +++++ + + l++p  f+  h +k  ++ + +l+ ++g  W v +    ++ r +l++G  +Fv+an+Lk+gD +vF l+++
  Rmu_sc0003153.1_g000005.1 462 VSIKPSYIRGNYLWVPTVFVHGHLIK--RPSDAILKVSDGAGWPVCF--HYNKARATLQGGFAKFVRANNLKAGDACVFVLTNN 541
                                556788888899********888655..55689999***********..55556688***********************9987 PP

                                SEE..EEEEE CS
                         B3  88 sefelvvkvf 97 
                                 +f + v +f
  Rmu_sc0003153.1_g000005.1 542 IKFLFDVFIF 551
                                7775555555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    
MTSYLSREFD HRKFGSQPTF RSTTPHFLSI ILDDTSRDVK LGIPEDFVSK YGKDLSNSVT  60
FRLPCGSEWV VGLTRYNGEV WFEKGWPDFS KFYSLGYNDL LVFGYEGKSR FQVSIFDKST  120
IEIEYPVKVP NIEESDEHDD SSVEILEDFP LYLRKAGETS RLPSPLPRMK NRTVSSGTAK  180
INLSFEKSMK KKQTHGSKSG RKRKDHFSVK KEWGSTSSTK RFQKQTPEVH SKANVFKSHN  240
CPFRMVIRPS YFNQNLLWLP SVFVRTHLMK QPSSVILWVP GGSKTWTVAL NYQQKARRVS  300
FNTGWIEFLR DNNVKVWDVC VFMLIDEIRL LFEVVTEAAN CTMSSDTDEL DNEDNVTELD  360
DADDDEDADD DSIEILDHFP SFTKGKEKFA LPSQLHKRRR ATSSTKAEST MKHVGGCSKT  420
QKFLKQRPEV SRRIHPVMAS IGRDLAFQRA TAFKPPHPHF AVSIKPSYIR GNYLWVPTVF  480
VHGHLIKRPS DAILKVSDGA GWPVCFHYNK ARATLQGGFA KFVRANNLKA GDACVFVLTN  540
NIKFLFDVFI FRTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190204KKKQTHGSKSGRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-32B3 family protein