PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003076.1_g000021.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 446aa MW: 49776.2 Da PI: 7.966

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003076.1_g000021.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.1	3.9e-19	106	194	3	99
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 kv+ ps+v+ +l+lpkkf+++h + +++++++ledesgr+++ k+ ++ + l++GW++F a++L +gD+vvF+++ Rmu_sc0003076.1_g000021.1 106 KVMRPSNVTGCFCLSLPKKFCSDHL-P-KQDTMIVLEDESGREFQTKY--LVGKAG--LSAGWRGFSIAHKLLAGDVVVFQRVT 183 8999***************9995.3.37789***********..555444..9********************766 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 s+f +v ++r+ Rmu_sc0003076.1_g000021.1 184 PSKF--KVYIVRS 194 5666..8888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MSETQRLSMA IVPFQEHIPS CSPPKFNTER PLKEKEHVFR DKSSCLREIT NVVNANTMKS 60 ESDKLKRCKK ATVESLYDTS EAQCSVMERA KKLEANLAPE FPKVAKVMRP SNVTGCFCLS 120 LPKKFCSDHL PKQDTMIVLE DESGREFQTK YLVGKAGLSA GWRGFSIAHK LLAGDVVVFQ 180 RVTPSKFKVY IVRSSGLDVA DCALGLVKLD AGIRQMDTAN FTARETAKVS IPREPIQKKN 240 TIACNTSLAQ MSDRSGNDGE DFGSEVLDGI RLAESVIPFK EVKGMENFDV IINGLVLNSE 300 FSKYHLTKYY ELCCSQSSFL HKNILEGLNF KLVAGIISET INISDAIRAC KITTSECDFL 360 TWDKTLQASE TLGMNVGFLR TRLNKLASLA SESKRYSNLE GGQAEAEVKL LGKKETTTWF 420 DSEIETHNLL SERLKAMFEE VARAPW

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MSETQRLSMA IVPFQEHIPS CSPPKFNTER PLKEKEHVFR DKSSCLREIT NVVNANTMKS  60
ESDKLKRCKK ATVESLYDTS EAQCSVMERA KKLEANLAPE FPKVAKVMRP SNVTGCFCLS  120
LPKKFCSDHL PKQDTMIVLE DESGREFQTK YLVGKAGLSA GWRGFSIAHK LLAGDVVVFQ  180
RVTPSKFKVY IVRSSGLDVA DCALGLVKLD AGIRQMDTAN FTARETAKVS IPREPIQKKN  240
TIACNTSLAQ MSDRSGNDGE DFGSEVLDGI RLAESVIPFK EVKGMENFDV IINGLVLNSE  300
FSKYHLTKYY ELCCSQSSFL HKNILEGLNF KLVAGIISET INISDAIRAC KITTSECDFL  360
TWDKTLQASE TLGMNVGFLR TRLNKLASLA SESKRYSNLE GGQAEAEVKL LGKKETTTWF  420
DSEIETHNLL SERLKAMFEE VARAPW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-32	B3 family protein