PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003043.1_g000016.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 326aa    MW: 36658.9 Da    PI: 8.8619
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003043.1_g000016.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.62e-17135223396
                                EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                  l psd  +s  l+l  +f ++h  +++ ++   +tl+ ++gr W+v+++y+k + +  +++GW  Fvk+n+L++gD++vF l
  Rmu_sc0003043.1_g000016.1 135 VSLQPSDIQSS--LSLLSEFSRRHliKLP-AS--NITLRVLDGRIWSVEFTYTKEKAQ--FQGGWLTFVKDNNLEVGDVCVFVL 211
                                45545555544..9**********75544.33..69999999********77777766..9**********************9 PP

                                -SSSEE..EEEE CS
                         B3  85 dgrsefelvvkv 96 
                                +++ +  l v +
  Rmu_sc0003043.1_g000016.1 212 IKDIKLLLGVLF 223
                                987444455555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MTMPKIEEAD EDDDLSIEIL EGFQPSPKTR RKCPLACPPY KKMRASLSGK ADVSSEIENT  60
QPCDMFEKPI TNKESHRNKV EVENLENKGK KDGRVLGGLS GTQRFLKKTS HKVVGNGLAL  120
HRAYDFKTEN PSFVVSLQPS DIQSSLSLLS EFSRRHLIKL PASNITLRVL DGRIWSVEFT  180
YTKEKAQFQG GWLTFVKDNN LEVGDVCVFV LIKDIKLLLG VLFFRTSEAT TWFLSNGENF  240
FLAERDGGSS SSSQTILKRT HEVVARVKPL TATEKANAFK SDKPSFRIAM HPYSIHYNNV  300
PSFKFQMEEL GLLTSSLIMQ TQGLDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-10B3 family protein