PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002978.1_g000027.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 251aa    MW: 28074.8 Da    PI: 10.1753
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002978.1_g000027.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000252345123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y C++C+ sF+++  +  H + H
  Rmu_sc0002978.1_g000027.1 23 YICTICSLSFTTSQAFAGHHNAH 45
                               89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MFRKPNLGSA ESSKKNPNER RSYICTICSL SFTTSQAFAG HHNAHRLRHD RWRLSQEENN  60
ANNPALAEPN DSKRPLLRDP ISSGRPDDDE HNSRPFYTFM TTEPNVRTPV DPGPSPALTS  120
RSWSGPGQDL ASGSRTGENS SYGESTKKRK FSELTRLKTG SADESANKLD FRSNLKLEVW  180
RARSGQRARP GTQGQRVRSG TLGQIGGRSS RVRSENEVRD LEHVRLEKEV GDSRQVSSEN  240
DEVGEVNELL K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.13e-06C2H2 family protein