PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002971.1_g000022.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 380aa    MW: 41951.6 Da    PI: 6.7247
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002971.1_g000022.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.22e-17265299135
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Rmu_sc0002971.1_g000022.1 265 CLHCSTEKTPQWRTGPMGPKTLCNACGVRYKSGRL 299
                                99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    
MEAPEYFQNS FCPQFVTEKQ RHSFDNTKAN NGAGAGDGFM VEDLLDFSND DAVITDAAAA  60
FDNVTGNSTD SSTLTVIDSS CNSSSLSGCE PVNFPADFGS RNFNEVPFSS DLCVPYDDLA  120
ELEWQLSSFS EESFSSEDLQ KLQLISGMKA RPDEAASETR HFQPDPNNHS IGNHNNNNPI  180
FNSDISVPAK ARSKRSRAAP CNWTSRLLLL TPKESSPESS DVVISEPPSL PPVASSVGKK  240
TLKAAPKKKE NPEGCAAVPG DGRKCLHCST EKTPQWRTGP MGPKTLCNAC GVRYKSGRLV  300
PEYRPAASPT FVLTKHSNSH RKVLELRRQK EMVRAQHQYI HHQPPPHHHH HHHNPNMIFD  360
VNGGDYLIHQ HVGPDFRQLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-73GATA family protein