PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0002902.1_g000037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 225aa MW: 25500.8 Da PI: 6.9034 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 74.9 | 1.7e-23 | 50 | 135 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 Y+eY+ ++GFsvr+ + +k+ n+ +++ +++Cskeg++ +++ + e ++ r trtgC+ak++ +++++ w+vt ++ eH Rmu_sc0002902.1_g000037.1 50 LYCEYGARMGFSVRIMQRRKT--NNIVKQVNYCCSKEGFKLDSDPS-EMKKADRLDTRTGCTAKIRFGLQDNNLWKVTLFVPEH 130 7***************98888..888****************9999.999********************************** PP FAR1 86 nHela 90 nH+la Rmu_sc0002902.1_g000037.1 131 NHKLA 135 ***97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence |
MPTVIDIEDD GEHSMGTALG KDSMFVNRQV SNDDDLYGVI VNSEEEAFNL YCEYGARMGF 60 SVRIMQRRKT NNIVKQVNYC CSKEGFKLDS DPSEMKKADR LDTRTGCTAK IRFGLQDNNL 120 WKVTLFVPEH NHKLAEPEER QFLRSNRKVS NAHQGVIKSM KTAGMSTINT YSYLAEEVGG 180 SQNVGFTKTD CYNFVSRERM IMLEAGDAQS RGCSKLDKFI QEKAN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-25 | FAR1 family protein |