PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0002895.1_g000012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | C2H2 | ||||||||
Protein Properties | Length: 282aa MW: 30740.8 Da PI: 7.127 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 107 | 129 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Rmu_sc0002895.1_g000012.1 107 FSCNYCQRKFYSSQALGGHQNAH 129 89*****************9988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence |
MEPTRNVVST PEAPPSPNTP LQDPNESKKK LVILEDQDEE EIEEVNRPNT VLLLDLELSN 60 TSKDSTSNSS GFNPELNLID SLQMGGSSSE TDQSSPGDQG AAEPRVFSCN YCQRKFYSSQ 120 ALGGHQNAHK RERTLAKRGQ RQLMASTAAA AGFGGYPYFH HHNHPYFSSM ASLPLHGAYN 180 NKSLDIQVHS MIHKPSGSGS GIGFGSSYGN RGHKSSRPIF DQQPAIGKLA PQNFQTTSSS 240 RGSSTSSVGR FDMANVGWLE NGSRFRSGQH EEMKNLDLSL KL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 3e-38 | C2H2 family protein |