PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0002888.1_g000021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB_related | ||||||||
Protein Properties | Length: 209aa MW: 23483.1 Da PI: 6.6258 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 3 | 26 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia +++ gRt++++k++w++ Rmu_sc0002888.1_g000021.1 3 RWSLIAGRIP-GRTDNEIKNYWNTT 26 5*********.************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence |
MCRWSLIAGR IPGRTDNEIK NYWNTTLGKK VNNGQDDVHQ VHLTVENKNK KKKKKKYKTK 60 SLTTVLDSIA AIRTRAVRCV TSHLVPHPLV KNVHGTALEE SINNSEEDNT ITTATTTTTS 120 PSENLVLEFD VGKLFNVSES IPDSSDDYWE LCQFGGGDKV LEDQYGGYIN NGGGSSNNYK 180 WSSASSEPIL FSEEILKDWM REDCFHHQS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 56 | KKKKKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 6e-12 | MYB family protein |