PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0002790.1_g000023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | C2H2 | ||||||||
Protein Properties | Length: 313aa MW: 34392.6 Da PI: 6.5955 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0015 | 138 | 160 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H Rmu_sc0002790.1_g000023.1 138 YECKTCNRCFSSFQALGGHRASH 160 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13 | 0.00032 | 220 | 242 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg Fs+ L H+r+H Rmu_sc0002790.1_g000023.1 220 HECSVCGAEFSSGQALGGHMRRH 242 78********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence |
MMMMMMEAAN LEEDQNQMMI IKGKRTKRPR LSSPIVLTTT ASSSSSPGGG DDVEDHHHQL 60 GMISTPIRVS DQDDETTASP ATSAEFTEMS TTEEEEDMAN CLILLAQSGQ TQIRKVQEQQ 120 QPIKAVAAAD TAPGLYVYEC KTCNRCFSSF QALGGHRASH KKPKASNVIN TTQAQPKKEL 180 SCMEDQDEYD RRFNNNTTST TLSLQISNRG FGNSKGNKVH ECSVCGAEFS SGQALGGHMR 240 RHRTSMNSTT TAQTLSSPQP QAPNKRPRSV LELDLNLPAP EEERLEMTKL PFSSSKKEQV 300 IVFSASPLVG CHY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03510.1 | 8e-48 | C2H2 family protein |