PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0002722.1_g000010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 114aa MW: 13034.5 Da PI: 7.7132 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 23 | 2.2e-07 | 7 | 27 | 2 | 22 |
NAM 2 ppGfrFhPtdeelvveyLkkk 22 p+G+rFhPtd elv +yL+++ Rmu_sc0002722.1_g000010.1 7 PVGYRFHPTDLELVAYYLHNR 27 89****************986 PP | |||||||
2 | NAM | 34.1 | 8.2e-11 | 38 | 100 | 53 | 115 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapk 115 +ee+ +yfF++r+k ++++k+ r++ sg+W+a+ +++ v + +++++g+k+ + + g++p+ Rmu_sc0002722.1_g000010.1 38 KEEETLYFFTHRKKLNPKEKKFDRKVGSGTWSAQYSKTVVAADNSTVIGIKREFRYEGGSDPH 100 245577******************************99999999************9888876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence |
MELGAYPVGY RFHPTDLELV AYYLHNRDMF CAQSNNMKEE ETLYFFTHRK KLNPKEKKFD 60 RKVGSGTWSA QYSKTVVAAD NSTVIGIKRE FRYEGGSDPH QNGADAGVPD HISQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62380.1 | 6e-12 | NAC family protein |