PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002711.1_g000019.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 755aa    MW: 83052.6 Da    PI: 6.7012
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002711.1_g000019.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.4e-24144245199
                                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD
  Rmu_sc0002711.1_g000019.1 144 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGD 226
                                99****************************963.3445679******************************************* PP

                                EEEEEE-SSSEE..EEEEE-S CS
                         B3  79 fvvFkldgrsefelvvkvfrk 99 
                                 v+F   + +++el+++v+r+
  Rmu_sc0002711.1_g000019.1 227 AVLFL--RGEDGELRLGVRRA 245
                                *****..449999*****996 PP
2Auxin_resp115.74e-38270351182
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                                +++a+++k++F+v+YnPras+seF+++++k++++l +++++GmRfkm+feted++err++G+v+g+s+ld++rWp+SkW++L
  Rmu_sc0002711.1_g000019.1 270 VVDAITMKTAFNVYYNPRASSSEFIIPFHKFLRSLGHSFCAGMRFKMRFETEDAAERRYTGLVTGISELDSLRWPGSKWKCL 351
                                578999***************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    
MAGLIDLNST TEEEEETPSS GSSSNSSGSN ALISGSVCLE LWHACAGPLI SLPKKGSVVV  60
YLPQGHLEQV NDFPASVYDL PAHLFCRVVD VKLHAETGSD EVYAQVQLVP ESEEFEHKLG  120
EGETDADGDE DAEALEKSTT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYSQQRP  180
SQELVAKDLH GLEWRFRHIY RGQPRRHLLT TGWSAFVNKK KLVSGDAVLF LRGEDGELRL  240
GVRRAAQVKA SATYPTPCSQ HLNYNSVAEV VDAITMKTAF NVYYNPRASS SEFIIPFHKF  300
LRSLGHSFCA GMRFKMRFET EDAAERRYTG LVTGISELDS LRWPGSKWKC LVVRWDDIDT  360
SKQHGRVSPW EIEPSGSISN SSGLMASGLK RSRMGLSAEK QEFPVPHGVG ASDFGESLRF  420
QKVLQGQEIS GFDTPFGSIG GQNQHPSESR RVFHGSIGSR GNDLRNSLVN SEIASKGFGE  480
SFRFQKVLQG QEIFPSTPYG RAPATSEARE YGSPGIFDGF QVPSFRNGWS TMMQGNNTHM  540
HRAAPVQVSS PSSVLMFQQA MNAGAEFNSV YNGHNQEEQR IMQRNPYSES DGGKPTSSSF  600
CERSFSREGH GGMNSFQHAI SHPPHSSQSS LRGSQDMVSS CKSSCRLFGF SLSEETHAPN  660
KVDNSTSVAS TLDPGASLFP NQLEFPVPKN GLLTGVEKGW KVVYKDSNNN AGLVGMFHGR  720
IATTILCKKY ESEDSWRRRF FSGSACVVFY VTELL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein