PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002709.1_g000038.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 259aa    MW: 28007.6 Da    PI: 4.4816
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002709.1_g000038.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-1747107357
                                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                +R+t+t+ ql++L+ l++   ++yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  Rmu_sc0002709.1_g000038.1  47 NRWTPTPAQLRILQGLYYDkgHKYPTPEQIQEICLHLkpygQIEDKNVFFWFQNLKARERQ 107
                                7****************9557**************************************97 PP
2Wus_type_Homeobox93.81.5e-3045108264
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                +++RWtPtp Q++iL+ ly+ +G + P+ e+iq+i  +L+ yG+iedkNVf+WFQN kaRerqk
  Rmu_sc0002709.1_g000038.1  45 TTNRWTPTPAQLRILQGLYYdKGHKYPTPEQIQEICLHLKPYGQIEDKNVFFWFQNLKARERQK 108
                                579***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MEPRTLELME LQTQQQMELQ AQQPTEEGGS TQAAGSSANT PIRPTTNRWT PTPAQLRILQ  60
GLYYDKGHKY PTPEQIQEIC LHLKPYGQIE DKNVFFWFQN LKARERQKLK EFRNVRVGGS  120
LDLKFGSTSS TDDGRSIDLN FDSTGSTGDD GSIDLTFGSC VGYGVDPYSS SPFNANINTT  180
SYGTAGGQTS MDQRGGDHQE VETLPLFPVH GEDVLGDPKT TSDGGSAYGY YSGGSGGYNS  240
GSHVSLELSL NPSGAADLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-21WOX family protein