PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002700.1_g000047.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 436aa MW: 47628.6 Da PI: 9.721

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002700.1_g000047.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00032	200	222	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg F +nL+ H+ + H Rmu_sc0002700.1_g000047.1 200 SCPECGAIFMKAENLELHQAVrH 222 8******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MAKLKSQKKP TKPTHQKSKK QNQNQNQNPQ KPEIKPPYWA VVRGLLTCKH HQAVQLLQQE 60 GKHHPQKQQN EQLASMEEMS AAKKCKKMRC SGSLCSNTKI THRPELGSPE VHKKRASSMG 120 SSSSTNETSS RSMKAPLHEL NGVVSTSSSS LSASSNISSA GGSFRAMPFR RFSGCYECRM 180 VVDPVLGFAR DPSLRGSICS CPECGAIFMK AENLELHQAV RHAVSELGPE DTSKNIVEII 240 FQSSWLKKQA PICKIDRILK VHNTQKTISK FEEYRDSIKA KATKLQLPNK KHPRCIADGN 300 ELLRFHCTTF DCSLGLNGSS NLCNSIPSCN VCSIIKNGFK VDRSELAGSN GILTTATSGR 360 AHDMAAVAAE DGRMAMLVCR VIAGRVKKNV DGQGGGAVEE YDSVAGAVGV YSNLDELYVF 420 NPKAILPCFV VIYGGF

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MAKLKSQKKP TKPTHQKSKK QNQNQNQNPQ KPEIKPPYWA VVRGLLTCKH HQAVQLLQQE  60
GKHHPQKQQN EQLASMEEMS AAKKCKKMRC SGSLCSNTKI THRPELGSPE VHKKRASSMG  120
SSSSTNETSS RSMKAPLHEL NGVVSTSSSS LSASSNISSA GGSFRAMPFR RFSGCYECRM  180
VVDPVLGFAR DPSLRGSICS CPECGAIFMK AENLELHQAV RHAVSELGPE DTSKNIVEII  240
FQSSWLKKQA PICKIDRILK VHNTQKTISK FEEYRDSIKA KATKLQLPNK KHPRCIADGN  300
ELLRFHCTTF DCSLGLNGSS NLCNSIPSCN VCSIIKNGFK VDRSELAGSN GILTTATSGR  360
AHDMAAVAAE DGRMAMLVCR VIAGRVKKNV DGQGGGAVEE YDSVAGAVGV YSNLDELYVF  420
NPKAILPCFV VIYGGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-102	C2H2 family protein