PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002564.1_g000015.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 387aa MW: 44304.6 Da PI: 8.9578

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002564.1_g000015.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.7	1.4e-21	27	112	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 Y+eY+ ++GFsvr+ + +k+ n+ + + ++vCskeg++ +++ + e ++ r trtgC ak++ +++++++w+ t ++ eH Rmu_sc0002564.1_g000015.1 27 LYCEYGARMGFSVRIMQRRKT--NNFVRQVNYVCSKEGFKLDSDPS-EVKKVYRLDTRTGCIAKIRFRLQDNNVWKATLFVPEH 107 7*************98888..8889***********9999.99999**************************** PP FAR1 86 nHela 90 nH+la Rmu_sc0002564.1_g000015.1 108 NHKLA 112 *97 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MIVNRQASNN DNLYGVIVNS EEEAYNLYCE YGARMGFSVR IMQRRKTNNF VRQVNYVCSK 60 EGFKLDSDPS EVKKVYRLDT RTGCIAKIRF RLQDNNVWKA TLFVPEHNHK LAEPEERPFL 120 RSNRKVLEAH KGVIRSMKSP GMTTINTYSY LAEEVGGSQN VGFTKTDCYN FESREKMIML 180 EAGDAQSLIN LFKKKQIEDP MFFYTVQVDQ ENRMTNFFWR DGKSKTDFEC FGDVIVFDTT 240 YRTNKYNMIC APFVGANHHW KNVLFGCAFL LDETTASFIW LFETFLEAME GKKPKTIFTD 300 RCQAMANAIE KVFPETRHRT SANAPPNSEA LPSQKLEIIV FIILRCLAQL ASAIASPSPS 360 PRASRFRPCP RGTSTTTCPG SPSIRTN

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MIVNRQASNN DNLYGVIVNS EEEAYNLYCE YGARMGFSVR IMQRRKTNNF VRQVNYVCSK  60
EGFKLDSDPS EVKKVYRLDT RTGCIAKIRF RLQDNNVWKA TLFVPEHNHK LAEPEERPFL  120
RSNRKVLEAH KGVIRSMKSP GMTTINTYSY LAEEVGGSQN VGFTKTDCYN FESREKMIML  180
EAGDAQSLIN LFKKKQIEDP MFFYTVQVDQ ENRMTNFFWR DGKSKTDFEC FGDVIVFDTT  240
YRTNKYNMIC APFVGANHHW KNVLFGCAFL LDETTASFIW LFETFLEAME GKKPKTIFTD  300
RCQAMANAIE KVFPETRHRT SANAPPNSEA LPSQKLEIIV FIILRCLAQL ASAIASPSPS  360
PRASRFRPCP RGTSTTTCPG SPSIRTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-70	FAR1 family protein