PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0002536.1_g000004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 115aa MW: 13511.4 Da PI: 5.2498 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56.6 | 8.7e-18 | 7 | 110 | 1 | 94 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkr 73 l pG rF P ++el++ yLk+kv++ +++ e+ i e+d+y +Pw++ + + a ++k++yfF++++kk+at++r Rmu_sc0002536.1_g000004.1 7 LLPGQRFCPMEDELLMSYLKPKVNEMQVPDnEDLICEMDLYGDqDPWKIWErfearR--AndlrRNKDLYFFTQKRKKTATSTR 88 579***********************96651456******97549****74344442..1345466799*************** PP NAM 74 knr.atksgyWkatgkdkevls 94 +++ + g+Wk ke++ Rmu_sc0002536.1_g000004.1 89 TSQtFGSGGTWKGLNAAKEMYL 110 ***4455889**9998888775 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence |
MEGGCMLLPG QRFCPMEDEL LMSYLKPKVN EMQVPDNEDL ICEMDLYGDQ DPWKIWERFE 60 ARRANDLRRN KDLYFFTQKR KKTATSTRTS QTFGSGGTWK GLNAAKEMYL LDQNQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 1e-06 | NAC family protein |