PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002536.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 221aa    MW: 24408.7 Da    PI: 4.5387
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002536.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.18.2e-153997355
                               --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHH CS
                   Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRake 55
                               +R+++t+ ql++L+el++    ++p+ e+++ +  +l    +++ ++V++WFqN +a+e
  Rmu_sc0002536.1_g000002.1 39 NRWAPTPAQLRILQELYYDrgLKNPNPEQIQGICLHLkpygQIENKNVFYWFQNLKARE 97
                               7****************9657************************************97 PP
2Wus_type_Homeobox94.41e-3037100264
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                +++RW+Ptp Q++iL+ely+ +Gl++Pn e+iq i  +L+ yG+ie+kNVfyWFQN kaRe qk
  Rmu_sc0002536.1_g000002.1  37 TNNRWAPTPAQLRILQELYYdRGLKNPNPEQIQGICLHLKPYGQIENKNVFYWFQNLKARESQK 100
                                679***************9879***************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MELQTQQHLE LQQQQPTEEE GSNQATGSSA NTPIRPTNNR WAPTPAQLRI LQELYYDRGL  60
KNPNPEQIQG ICLHLKPYGQ IENKNVFYWF QNLKARESQK LKEIRNVRVG GSLDLKFGST  120
SSTDGGRSID LNFGSTDSTG DDGSIDLTLE LQSFMERRGG DHQEVETLPL FPEHGENILG  180
NPKTSSEEVN AFGYYSGGSG GYNSGSPVSL ELSLNPFGAT D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-21WOX family protein