PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0002532.1_g000010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | C2H2 | ||||||||
Protein Properties | Length: 227aa MW: 24628.4 Da PI: 4.3189 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00026 | 200 | 223 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C C++sF++ L++H + H Rmu_sc0002532.1_g000010.1 200 FRCDPCNRSFNSDGALQSHTKAkH 223 89999**************99877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MANKMKFWGV EVKSGESIVV EPGITLVHLS QACLDEVKKG KGSDSISLFV KTAEPKVSLE 60 EAKKEIKSDK KDSSSDDDDD DESEDEEFDQ VKSVEDGSED DEESSDDDDD DDDSEDEDDD 120 SEDENEETPN KVDGSNKRAA ESSKTPVQKK AKFVTPEKTS GKKGAVHTAT PYPSKQALKR 180 PANTDQTKLQ SSKSSGGGTF RCDPCNRSFN SDGALQSHTK AKHGAAK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 1e-19 | C2H2 family protein |