PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002460.1_g000049.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 402aa MW: 45139.3 Da PI: 10.4277

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002460.1_g000049.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.5	1.9e-51	112	237	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrF Ptdeel+v+yL++kv+g +++l ++i e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWk Rmu_sc0002460.1_g000049.1 112 LPPGFRFYPTDEELLVQYLCRKVAGYQFNL-QIIGEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWK 194 79**************************.89***********7777799************************* PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Rmu_sc0002460.1_g000049.1 195 ATGTDKIITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 237 **9999.999**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MFFISPIRSW RLSLKEVGSM EIRSKSLGRQ GLGVERFEGL IEKSNFSIST VISTRAVHAP 60 KQKKAPGPYS LSDKAGRSIT SNFKRARGAI PLAANHTGPY RREQRDTMTL SLPPGFRFYP 120 TDEELLVQYL CRKVAGYQFN LQIIGEIDLY KFDPWVLPSK AIFGEKEWYF FSPRDRKYPN 180 GSRPNRVAGS GYWKATGTDK IITTEGRKVG IKKALVFYVG KAPKGTKTNW IMHEYRLIEP 240 SRKNGSSKLD EWVLCRIYKK SSGSSAVPGF PTPFLRRSFH LAVGICEVWV WVRSSVLLLA 300 RTKIMFLVVI VRVVILFLHA GNDADVKNGE VPVDELERSC FRVGLIRPEQ RLGLLDQPPV 360 LSDQTGGTHF KNTVESWDAG DPVDLGLFGS LAVVELKLVG PA

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MFFISPIRSW RLSLKEVGSM EIRSKSLGRQ GLGVERFEGL IEKSNFSIST VISTRAVHAP  60
KQKKAPGPYS LSDKAGRSIT SNFKRARGAI PLAANHTGPY RREQRDTMTL SLPPGFRFYP  120
TDEELLVQYL CRKVAGYQFN LQIIGEIDLY KFDPWVLPSK AIFGEKEWYF FSPRDRKYPN  180
GSRPNRVAGS GYWKATGTDK IITTEGRKVG IKKALVFYVG KAPKGTKTNW IMHEYRLIEP  240
SRKNGSSKLD EWVLCRIYKK SSGSSAVPGF PTPFLRRSFH LAVGICEVWV WVRSSVLLLA  300
RTKIMFLVVI VRVVILFLHA GNDADVKNGE VPVDELERSC FRVGLIRPEQ RLGLLDQPPV  360
LSDQTGGTHF KNTVESWDAG DPVDLGLFGS LAVVELKLVG PA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-104	NAC family protein