PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002460.1_g000042.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 351aa MW: 39431.2 Da PI: 7.0249

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002460.1_g000042.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.4	1.1e-52	18	159	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkkyatgkrkn 75 lppGfrFhPtdeelvv+yLkkkv++ +l++ +i+evd+yk++Pw+Lp+ k++ +e+ewyfFs+rd+ky++g r+n Rmu_sc0002460.1_g000042.1 18 LPPGFRFHPTDEELVVHYLKKKVSSAPLPV-AIIAEVDLYKFDPWQLPEtdmmydlteKATFGEQEWYFFSPRDRKYPNGARPN 100 79**************************.88**********955888877665555999*************** PP NAM 76 ratksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 ra++sgyWkatg+dk+vls+ ++++vg+kk Lvfy+g+ pkg kt+W+mheyrl Rmu_sc0002460.1_g000042.1 101 RAATSGYWKATGTDKPVLSTtdegggGTRKVGVKKALVFYRGKPPKGIKTNWIMHEYRL 159 ***************98888877778*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MESTDSSFGS QPPPQPNLPP GFRFHPTDEE LVVHYLKKKV SSAPLPVAII AEVDLYKFDP 60 WQLPETDMMY DLTEKATFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPVLST 120 TDEGGGGTRK VGVKKALVFY RGKPPKGIKT NWIMHEYRLA DNNPSNKPPG CQGLGNKKNS 180 LRLDDWVLCR IYKKNNTHRP MDQEDSMEDM MGSSFQLSKL HHLPPKSTTS TYSQFMDNDH 240 NLFDWMVSHE GINSSTASFL PNAALANSSL PLKRGLPSLY WNDQEDEAGP SRRLQLDNSD 300 STGNGSIATL LSQLPQTPPP LHQQPMLGSQ LGGDSLFRDT QYQLPGMNWY S

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MESTDSSFGS QPPPQPNLPP GFRFHPTDEE LVVHYLKKKV SSAPLPVAII AEVDLYKFDP  60
WQLPETDMMY DLTEKATFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPVLST  120
TDEGGGGTRK VGVKKALVFY RGKPPKGIKT NWIMHEYRLA DNNPSNKPPG CQGLGNKKNS  180
LRLDDWVLCR IYKKNNTHRP MDQEDSMEDM MGSSFQLSKL HHLPPKSTTS TYSQFMDNDH  240
NLFDWMVSHE GINSSTASFL PNAALANSSL PLKRGLPSLY WNDQEDEAGP SRRLQLDNSD  300
STGNGSIATL LSQLPQTPPP LHQQPMLGSQ LGGDSLFRDT QYQLPGMNWY S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-106	NAC family protein