PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0002453.1_g000004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 148aa MW: 15966.1 Da PI: 10.2783 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.7 | 1.1e-11 | 12 | 55 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i n+ r v f++Rr+g++KKA+ L + ++ +a+ ++s+tg+ Rmu_sc0002453.1_g000004.1 12 PITNYQSRMVAFTRRRTGLFKKAQKLEEMSGTSIAIAVISETGQ 55 799***************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence |
MGTGKKKIDI EPITNYQSRM VAFTRRRTGL FKKAQKLEEM SGTSIAIAVI SETGQPYLHG 60 STSLLERVLT SKASSSTVTG SSTTTADAGS STTTATTGSL ERFKARVNSQ IEACATLEDA 120 ESLKRKLLEI KRRADDKVSG SDLQFVLN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 7e-12 | M-type_MADS family protein |