PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002449.1_g000028.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 267aa    MW: 30292.8 Da    PI: 6.1792
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002449.1_g000028.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.59e-2261422127
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpk...kvkaeekewyfFskrdkkya.....tgkrknr 76 
                                p+G+rFhPtdeel+ +yL+ k + ++ + + v++e+d+y ++ePw +       + ++++++fF+  +kk++      ++r++r
  Rmu_sc0002449.1_g000028.1   6 PVGVRFHPTDEELIGHYLHLKNNPNSATPSLVLPEFDLYgEAEPWIIWDaygGPNLKQQDLFFFTLLKKKANprgghASTRHSR 89 
                                89*******************99999777789*****99457*****74233333377899***99888877665553445555 PP

                        NAM  77 .atksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                                 + +sg+W++   +k+++    +++ +g k+ L + ++  p+ ++  W+m+ey+
  Rmu_sc0002449.1_g000028.1  90 rVGSSGTWSQGEPSKPIFGDknQETPIGRKTKLRYENKLVPE-QHGCWIMEEYT 142
                                4788**************97445555********99777777.899*******7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MDRCFPVGVR FHPTDEELIG HYLHLKNNPN SATPSLVLPE FDLYGEAEPW IIWDAYGGPN  60
LKQQDLFFFT LLKKKANPRG GHASTRHSRR VGSSGTWSQG EPSKPIFGDK NQETPIGRKT  120
KLRYENKLVP EQHGCWIMEE YTSVDDQSSC PAAHDHYAIC RLRENKTGQR RKSQDDDDHH  180
PKPRKKPKSL TVADPQPAFT TNEARKTVSL NQSPNPEQQF QNELIISDGE AQSSIGMPED  240
IDWLDLALEE VEAPALAQQQ SFTFQLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183189PRKKPKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-14NAC family protein