PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002434.1_g000007.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 501aa    MW: 55822.6 Da    PI: 5.9706
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002434.1_g000007.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.61.1e-131161881897
                                --HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                         B3  18 lpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                +p+ f+ ++  g+++++     + ++ g++W v +  +k   +++++ GW++Fv++ngLk g  +vF++ g+s+f  +v +f
  Rmu_sc0002434.1_g000007.1 116 IPRAFL-QYfnGKVPPK----CFLQTLGQTWLVDV--EKVNHKFYFQLGWNRFVQDNGLKYGQLLVFRYAGNSNF--HVDIF 188
                                888898.5546666655....577889********..999999****************************9999..99998 PP
2B343.65.3e-144144951499
                                T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                         B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                + l lp++fa+ h  ++ ++  ++    +  sW vk++y ++  r  l++GW+eFv+ n+Lk gD +vF l++  +f++ v +f
  Rmu_sc0002434.1_g000007.1 414 AFLNLPRSFAAVHFTNP-QPSHVI-LWVEKSSWFVKVSYIGTATR--LQAGWSEFVHVNNLKIGDACVFVLTDAINFQYDVEIF 493
                                5689******9995553.443444.455779******77666655..************************9989999999999 PP

                                -S CS
                         B3  98 rk 99 
                                r 
  Rmu_sc0002434.1_g000007.1 494 RV 495
                                85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    
MGDFAETPSP AAGILSTFAG FRSTFARFLS PTASHRNLLK ISSESFFSPN RHLLPPNRGP  60
GSSTGGVQEA IEVVVVGTGQ AAAAESGLKS TRTGEAVGLG RAHRRVARNL GVAAKIPRAF  120
LQYFNGKVPP KCFLQTLGQT WLVDVEKVNH KFYFQLGWNR FVQDNGLKYG QLLVFRYAGN  180
SNFHVDIFGI NTCKNLCVIP EMEEANEYDD DVSLEILDDF PPCQRKTEEK SLLSCPLPRK  240
KNKTSSSGRA DITPNFRKRV PHLEKSQMKR KKAHWFKSEM IGAEYNYNSD TDSGDEDDHD  300
EEDDDENEDD EEEEEETQDE EVEEEDDGDS VGTLNDSLPC SRTVGKYTLA SRLHQRGRKI  360
SSAKAKTNIK TVDGLSREEK ILKVIALQRA NAFKSNSVNP CFMVSLSATY ACGAFLNLPR  420
SFAAVHFTNP QPSHVILWVE KSSWFVKVSY IGTATRLQAG WSEFVHVNNL KIGDACVFVL  480
TDAINFQYDV EIFRVTDAVC S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257272RKRVPHLEKSQMKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.17e-13B3 family protein