PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002349.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 287aa    MW: 33818.4 Da    PI: 9.6405
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002349.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.13.5e-161150342
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                               i n+s r +tf kR++g+lKK  E+ +LCd+++avii+ +
  Rmu_sc0002349.1_g000003.1 11 IANESSRRTTFRKRKKGLLKKVGEITTLCDIKAAVIIYNP 50
                               89***********************************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MARRKVRLHY IANESSRRTT FRKRKKGLLK KVGEITTLCD IKAAVIIYNP FDGEPEVFPS  60
HSEVHELLTK FRDMPQMDKT RKMVNQETFL RQRINKVREQ IRKMKRDNRE KEITQVMFGC  120
LKGRTLFNLE MKDLQDLNFI IEHNLKELEI KQRAANEQNA NGQKQEENQE NQFNRVQAES  180
IEVELGLMTR NAFVEGTSRG VQQQHHQAAM EAHSMEQWQY QMMQVAAQRQ QHQQLFQQQP  240
WFVDIMNSPP PQTRDFLHPL PPLQPGGFGD YNSDNATWPN NSSFCFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RRKVRLHYIANESSRRTTFRKRK
22226RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-42M-type_MADS family protein