PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002343.1_g000071.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 492aa MW: 53500 Da PI: 6.5077

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002343.1_g000071.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.1e-09	404	447	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ + K++ +++LekA+ Y+k Lq Rmu_sc0002343.1_g000071.1 404 IAAKNRRERISERLKILQELVPNgC------KVDLVTMLEKAISYVKFLQ 447 5679*****************77......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MALAKDRMPH DSLQHQVISS DHHLSNNGFV FRSAASTTSC YQAEDDHDQV AAGQSVINFK 60 NNGYNSSFIH DNSASLLSFE KSNNGITHDN DSYNCISRVD PVRLSGDFNC FQTASNNSSS 120 LSNPSNESHG SELGSAYGWL YSDATLMAES FPESETQVEA AFQKRPHKGE NMQPLKRQCT 180 SAVVAAATAT TKKPKPKSSS PSKDPQSIAA KVINLIASDV LNVQMTYTNT ASTTSCYQAE 240 DDHDQVAAGQ SVINFKNNGY NSSFIHDNSA SLLSFEKSNN GITHDNDSYN CISRVDPVRL 300 SGDFNCFQTA SNNSSSLSNP SNESHGSELG SAYGWLYSDA TLMAESFPES ETQVEAAFQK 360 RPHKGENMQP LKRQCTSAVV AAATATTKKP KPKSSSPSKD PQSIAAKNRR ERISERLKIL 420 QELVPNGCKV DLVTMLEKAI SYVKFLQLQV KVLATDEFWP IQGGKAPDIS QVKEAIDAIL 480 SSQRDTSSSS KL

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MALAKDRMPH DSLQHQVISS DHHLSNNGFV FRSAASTTSC YQAEDDHDQV AAGQSVINFK  60
NNGYNSSFIH DNSASLLSFE KSNNGITHDN DSYNCISRVD PVRLSGDFNC FQTASNNSSS  120
LSNPSNESHG SELGSAYGWL YSDATLMAES FPESETQVEA AFQKRPHKGE NMQPLKRQCT  180
SAVVAAATAT TKKPKPKSSS PSKDPQSIAA KVINLIASDV LNVQMTYTNT ASTTSCYQAE  240
DDHDQVAAGQ SVINFKNNGY NSSFIHDNSA SLLSFEKSNN GITHDNDSYN CISRVDPVRL  300
SGDFNCFQTA SNNSSSLSNP SNESHGSELG SAYGWLYSDA TLMAESFPES ETQVEAAFQK  360
RPHKGENMQP LKRQCTSAVV AAATATTKKP KPKSSSPSKD PQSIAAKNRR ERISERLKIL  420
QELVPNGCKV DLVTMLEKAI SYVKFLQLQV KVLATDEFWP IQGGKAPDIS QVKEAIDAIL  480
SSQRDTSSSS KL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66470.1	3e-55	bHLH family protein