PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002329.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 366aa MW: 40446.8 Da PI: 9.4391

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002329.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.4	6e-21	54	145	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +W+++e+ aLi+ +r+++ +lrrg+lk+++W++v++++ + ++++qC++k+e+l+kry+ + +++k+ s+ +s++ Rmu_sc0002329.1_g000011.1 54 CWSHDETVALIDSYRDKWYSLRRGNLKATHWQDVADAVsrrcPAASPAKTAVQCRHKMEKLRKRYRTEIQRAKSMpLSRFTSSW 137 7*****************************99998865556667799*********************977999 PP trihelix 80 pyfdqlea 87 ++f++++a Rmu_sc0002329.1_g000011.1 138 VHFKRMDA 145 ****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MASSPPSSPQ DDALIPLQSD PPQAVPLALP APPPPQLTPA SAPPPSSRRL PPPCWSHDET 60 VALIDSYRDK WYSLRRGNLK ATHWQDVADA VSRRCPAASP AKTAVQCRHK MEKLRKRYRT 120 EIQRAKSMPL SRFTSSWVHF KRMDAMEKGP AALKNENSDS PGDDGEDEEN DEEDDQDQEL 180 YEELRYGSNM KSMSKMYRNG VGVGVGGSGG SSVGGGSGGF RIRIPTGVSI AQPGNKVYPK 240 MDAKFGLNSH PGSHSGPSYA TAKVMRECNN NAGGRSGGLG KRERERERER DPVAEMVSAI 300 KVLGDGFVRM EQMKMEMARE IETMRMEMEM KRTEMILESQ QRIVEAFAKA VSEKKKKAKR 360 MPSPEA

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MASSPPSSPQ DDALIPLQSD PPQAVPLALP APPPPQLTPA SAPPPSSRRL PPPCWSHDET  60
VALIDSYRDK WYSLRRGNLK ATHWQDVADA VSRRCPAASP AKTAVQCRHK MEKLRKRYRT  120
EIQRAKSMPL SRFTSSWVHF KRMDAMEKGP AALKNENSDS PGDDGEDEEN DEEDDQDQEL  180
YEELRYGSNM KSMSKMYRNG VGVGVGGSGG SSVGGGSGGF RIRIPTGVSI AQPGNKVYPK  240
MDAKFGLNSH PGSHSGPSYA TAKVMRECNN NAGGRSGGLG KRERERERER DPVAEMVSAI  300
KVLGDGFVRM EQMKMEMARE IETMRMEMEM KRTEMILESQ QRIVEAFAKA VSEKKKKAKR  360
MPSPEA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	7e-60	Trihelix family protein