PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002327.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 228aa    MW: 25812.7 Da    PI: 8.7004
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002327.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.61.3e-32431771128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyat.gkrknratks 80 
                                lp G+rF+P d+elv +yL +k+ g++l++++vike+d+y+ +P +Lp    ++ ++ +e y+F++ ++ y++ gk ++r+tk 
  Rmu_sc0002327.1_g000003.1  43 LPTGYRFSPDDDELVLFYLVNKILGRTLPITDVIKEIDLYENDPDQLPlDdyRHGTKCNEAYYFTNVEQIYSSeGKVTKRTTKG 126
                                699*********************************************6434444455699********99964889999**** PP

                        NAM  81 gyWkatgkdkevlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                                gyWk t + k+v+   ++ +vg k+++ f kg   apkg+ ++ vmheyr+
  Rmu_sc0002327.1_g000003.1 127 GYWKVTSEGKQVIYGdDKVVVGFKTSMLFNKGhvPAPKGSVSSFVMHEYRV 177
                                *******9888887647778**********88556999***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MLSWVFIIVF MAFSPSASKK KGDFDLLKCS KVDVGKKEKE LKLPTGYRFS PDDDELVLFY  60
LVNKILGRTL PITDVIKEID LYENDPDQLP LDDYRHGTKC NEAYYFTNVE QIYSSEGKVT  120
KRTTKGGYWK VTSEGKQVIY GDDKVVVGFK TSMLFNKGHV PAPKGSVSSF VMHEYRVNPS  180
IVPVDVLNDS IRAKIERFVV CKIVSKEARP AYKLPPELLS HGEDAKSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.14e-28NAC family protein