PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002322.1_g000025.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CAMTA

Protein Properties

Length: 566aa MW: 62413.2 Da PI: 5.1366

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002322.1_g000025.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	91.2	9.7e-29	203	305	2	104
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyY 85 k +++wl +ee+ +++nfek +++ +++ +p+sgs+++y +kk ++ +DGy+wkk g++ + ekLK+ g e l cyY Rmu_sc0002322.1_g000025.1 203 NKATHQWLAPEEVDLLIQNFEKITISDQRPVKPESGSIFFYVKKKKLHYLQDGYKWKKTDAGRSGKFSNEKLKIAGKEELRCYY 286 45599**********************************9999999******************************** PP CG-1 86 ahseenptfqrrcywlLee 104 ah+ee+++f+rr y l+e+ Rmu_sc0002322.1_g000025.1 287 AHGEEDEKFTRRWYSLIEK 305 **************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence
MSAHLDNEAG RPLPQVVETA TNAGINVERV LSEEVVKNSE DNSDSDDAWG DTATPDSSDN 60 GGEGGSGTGG GGERYKYRQS SVDEGFEFTC EGNFDHATQD EDHGVRTAGH GAQEKTRYGR 120 RTRGATDDQS TPSDVSSIAL SFDSISLGTE RSGISNESHE SNNQFDQKTS PTLLQSSSPS 180 PIEKGLMAES TSGGCGGIEK ILNKATHQWL APEEVDLLIQ NFEKITISDQ RPVKPESGSI 240 FFYVKKKKLH YLQDGYKWKK TDAGRSGKFS NEKLKIAGKE ELRCYYAHGE EDEKFTRRWY 300 SLIEKPGPPN LPDIIDRSKR VVVHYLYDET YIPKRQKGSK NRSEVVPELD KDLKVKRSRT 360 SESCSTEIVE LTEDAEELHE LVESQEATDM EELKGVARAP ASPSVALPQQ PIPSVDQESL 420 QASEDTGVTL PGTLPCLLQQ INEPEQGELL DDWDPCVMSL QTDLEGYGGG RGGWGYGGGR 480 GGGVYEGGEF LRTSKQRCQG FVNNIDEMSR IPRRSMSRKK CGMWFRAVQR AFLCCSLKGI 540 GLRWKPKGRC VGHPSLKISS SKWGMC

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence

MSAHLDNEAG RPLPQVVETA TNAGINVERV LSEEVVKNSE DNSDSDDAWG DTATPDSSDN  60
GGEGGSGTGG GGERYKYRQS SVDEGFEFTC EGNFDHATQD EDHGVRTAGH GAQEKTRYGR  120
RTRGATDDQS TPSDVSSIAL SFDSISLGTE RSGISNESHE SNNQFDQKTS PTLLQSSSPS  180
PIEKGLMAES TSGGCGGIEK ILNKATHQWL APEEVDLLIQ NFEKITISDQ RPVKPESGSI  240
FFYVKKKKLH YLQDGYKWKK TDAGRSGKFS NEKLKIAGKE ELRCYYAHGE EDEKFTRRWY  300
SLIEKPGPPN LPDIIDRSKR VVVHYLYDET YIPKRQKGSK NRSEVVPELD KDLKVKRSRT  360
SESCSTEIVE LTEDAEELHE LVESQEATDM EELKGVARAP ASPSVALPQQ PIPSVDQESL  420
QASEDTGVTL PGTLPCLLQQ INEPEQGELL DDWDPCVMSL QTDLEGYGGG RGGWGYGGGR  480
GGGVYEGGEF LRTSKQRCQG FVNNIDEMSR IPRRSMSRKK CGMWFRAVQR AFLCCSLKGI  540
GLRWKPKGRC VGHPSLKISS SKWGMC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	245	275	KKKKLHYLQDGYKWKKTDAGRSGKFSNEKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09410.2	1e-24	CAMTA family protein