PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002316.1_g000012.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 1145aa MW: 129609 Da PI: 7.2747

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002316.1_g000012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27	7.6e-09	438	463	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C f++ tG Ck+G C+++H+ Rmu_sc0002316.1_g000012.1 438 PGQPECLFYMGTGDCKFGVDCRYHHP 463 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1145 aa Download sequence
MALSLVLDLI GGEVFQLFSG SVTRAVDRKA AFRDLLQDIK YTLKSLRRQA RVIQQIQQYN 60 LDLSLSNNEI IDIVTQMTKG RELIDSLSGI KFRLWNFCCT NDCAEQLKEL NRALESLFDT 120 LQLEQVRDAK ETLKLARQNH KDLKKMKVML EKILQMIDDP EVKGLLRKLV DQSSGDSMDD 180 ASTSTPTSNS ASGSNTEDEG NGVAQASSSG LVGAAFGLLI DAVIEVKVST KMFRPLLRRL 240 KSTLDCLRPF IEEMAGDKKL LDLPKEKLEN LRIQMENGVE LVRKCSSVRR WTSNKKDKYT 300 NQVFELDERL QGHLSILIME VARDVRVTSD LIRNIQKVIN RIEGSDFQGS CDITEPPIPP 360 VELEVLNMQK TSNVKETLVS EVNITEGSGV VQNRLEFKGS CDVLGPSSPT VGLDESKHGR 420 KDLIKETLQR ESVFPKRPGQ PECLFYMGTG DCKFGVDCRY HHPDCVFSPT GLPLQPETMP 480 NFSELSNMSP LTVGLDVHLK EMKRKLLNHG ESSILVLTGP AGCGKSTLAK AFCQDEEVKD 540 KFKDNIFFVT VSKKLSVDLI ALQILRQLKD EVPQVENQVT AVEWLGKFLK EAGQNPLLLV 600 LDDVWHVSEF LDNNNELKIE NLKILVTSRS ELRGFGSPYY INALSEEEAM TLIRRSAFLE 660 DRSSYVPEDI LRKIVKHCKG NALALTVIGR SLCRMPIDIW QKRIEELLKD SSISNCESDL 720 LSCLKISYDA LAENSVLKEC FLDLSLFPEY QRVPADALTD MWAELYGLGE NILPIMNLQE 780 LTTRGLAKLV GTRKEKVEVD GYYSTLCFNM HDIIRELAIH LTSQKPIEQR NRLHIEILGG 840 KLPNWINHLL EQKYQPMKAR LVSISTDEVF SQKWHNMQLP EAQVLVLNFQ TENYALPEFV 900 QNMGNLKVLI VTSCGTLPAF WPIGFLPAQL SNFQLLSSLP NLRTIRLEGI SISSISMHSI 960 QLKSLQKISL FNCRIGQTFS NTSIQLSDAF PNLVETNIDH CNDLVALPGI CDLVNLKKLS 1020 LIRCHYLSAL PPKIGKLSKL EVLRLKSCTV LEMLPGSIVK LNKLVFLDLS YCKRLKELPD 1080 VIGLRNLKTI DMRQCSRLQM LPPSFLYLKQ LQEVICDEET EKLWKPLLPR LKNLRIKFRF 1140 PEIHF

Sequence ? help Back to Top

Protein Sequence Length: 1145 aa Download sequence

MALSLVLDLI GGEVFQLFSG SVTRAVDRKA AFRDLLQDIK YTLKSLRRQA RVIQQIQQYN  60
LDLSLSNNEI IDIVTQMTKG RELIDSLSGI KFRLWNFCCT NDCAEQLKEL NRALESLFDT  120
LQLEQVRDAK ETLKLARQNH KDLKKMKVML EKILQMIDDP EVKGLLRKLV DQSSGDSMDD  180
ASTSTPTSNS ASGSNTEDEG NGVAQASSSG LVGAAFGLLI DAVIEVKVST KMFRPLLRRL  240
KSTLDCLRPF IEEMAGDKKL LDLPKEKLEN LRIQMENGVE LVRKCSSVRR WTSNKKDKYT  300
NQVFELDERL QGHLSILIME VARDVRVTSD LIRNIQKVIN RIEGSDFQGS CDITEPPIPP  360
VELEVLNMQK TSNVKETLVS EVNITEGSGV VQNRLEFKGS CDVLGPSSPT VGLDESKHGR  420
KDLIKETLQR ESVFPKRPGQ PECLFYMGTG DCKFGVDCRY HHPDCVFSPT GLPLQPETMP  480
NFSELSNMSP LTVGLDVHLK EMKRKLLNHG ESSILVLTGP AGCGKSTLAK AFCQDEEVKD  540
KFKDNIFFVT VSKKLSVDLI ALQILRQLKD EVPQVENQVT AVEWLGKFLK EAGQNPLLLV  600
LDDVWHVSEF LDNNNELKIE NLKILVTSRS ELRGFGSPYY INALSEEEAM TLIRRSAFLE  660
DRSSYVPEDI LRKIVKHCKG NALALTVIGR SLCRMPIDIW QKRIEELLKD SSISNCESDL  720
LSCLKISYDA LAENSVLKEC FLDLSLFPEY QRVPADALTD MWAELYGLGE NILPIMNLQE  780
LTTRGLAKLV GTRKEKVEVD GYYSTLCFNM HDIIRELAIH LTSQKPIEQR NRLHIEILGG  840
KLPNWINHLL EQKYQPMKAR LVSISTDEVF SQKWHNMQLP EAQVLVLNFQ TENYALPEFV  900
QNMGNLKVLI VTSCGTLPAF WPIGFLPAQL SNFQLLSSLP NLRTIRLEGI SISSISMHSI  960
QLKSLQKISL FNCRIGQTFS NTSIQLSDAF PNLVETNIDH CNDLVALPGI CDLVNLKKLS  1020
LIRCHYLSAL PPKIGKLSKL EVLRLKSCTV LEMLPGSIVK LNKLVFLDLS YCKRLKELPD  1080
VIGLRNLKTI DMRQCSRLQM LPPSFLYLKQ LQEVICDEET EKLWKPLLPR LKNLRIKFRF  1140
PEIHF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16540.3	3e-19	C3H family protein