PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002311.1_g000013.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 543aa MW: 61577.7 Da PI: 5.9659

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002311.1_g000013.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	147.2	8.4e-46	98	216	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 ppG+rF+P+d+elv +yL+kk+ +++l+ + i ev++y+++P++L ekewyfF++rd+ky++g r+nra+ +gyWka Rmu_sc0002311.1_g000013.1 98 PPGYRFNPRDDELVRYYLQKKIMDEPLPP-NKIMEVNLYRHNPETLA------EKEWYFFTPRDRKYRNGFRPNRAAGDGYWKA 174 9***********************999.77**********5......68************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg dk++ s ++ +vg++k Lvfy+g+ pkg+kt+W+mheyr+ Rmu_sc0002311.1_g000013.1 175 TGADKTIRS-GNVEVGCRKALVFYRGKPPKGKKTNWIMHEYRV 216 ****9.999**************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MSSPSKSPTM ELVQQSHPHP KASVTQVTAY GGSPSPIKQL QPITNEADRK ASFTGTHDAI 60 VVSSVAAEVD QFSDVEEELN NFNNNQKRQQ DAFLNSFPPG YRFNPRDDEL VRYYLQKKIM 120 DEPLPPNKIM EVNLYRHNPE TLAEKEWYFF TPRDRKYRNG FRPNRAAGDG YWKATGADKT 180 IRSGNVEVGC RKALVFYRGK PPKGKKTNWI MHEYRVPDSP DSRPPKRTEN DMRLDNWVLC 240 RIYKKADNKN NKSQSRNQDP VEESISTSLP DNMDMEMETN GQVDNPQALE SEKAYLYPIV 300 HPPLEFDRAY HNYAFPYPGG QPLCALVNNN MNNMLHHHRF QPVSLNSGDS YANMGQMQQA 360 CGTYSPMQFP DQNCGVQFSD QKRGVQFSDQ RFIMQPVDVT SGSMVCTDDQ KCGVQFPDEK 420 FIMQSLDVTS ESMVCTDEAC SDQKCGRQFP DKKFIVQSPD GSPQPMTFSH EKSGKSGQPD 480 DAVDSRPSSV PPLPDQKSTQ QGIGKPLLPP SDQGLRYVEE SNEDHNLMFG YPPFVSLETF 540 SWP

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MSSPSKSPTM ELVQQSHPHP KASVTQVTAY GGSPSPIKQL QPITNEADRK ASFTGTHDAI  60
VVSSVAAEVD QFSDVEEELN NFNNNQKRQQ DAFLNSFPPG YRFNPRDDEL VRYYLQKKIM  120
DEPLPPNKIM EVNLYRHNPE TLAEKEWYFF TPRDRKYRNG FRPNRAAGDG YWKATGADKT  180
IRSGNVEVGC RKALVFYRGK PPKGKKTNWI MHEYRVPDSP DSRPPKRTEN DMRLDNWVLC  240
RIYKKADNKN NKSQSRNQDP VEESISTSLP DNMDMEMETN GQVDNPQALE SEKAYLYPIV  300
HPPLEFDRAY HNYAFPYPGG QPLCALVNNN MNNMLHHHRF QPVSLNSGDS YANMGQMQQA  360
CGTYSPMQFP DQNCGVQFSD QKRGVQFSDQ RFIMQPVDVT SGSMVCTDDQ KCGVQFPDEK  420
FIMQSLDVTS ESMVCTDEAC SDQKCGRQFP DKKFIVQSPD GSPQPMTFSH EKSGKSGQPD  480
DAVDSRPSSV PPLPDQKSTQ QGIGKPLLPP SDQGLRYVEE SNEDHNLMFG YPPFVSLETF  540
SWP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-58	NAC family protein