PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0002279.1_g000014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 521aa MW: 60703.1 Da PI: 8.4951 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 66.5 | 7.1e-21 | 17 | 101 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 fYn+YAke+GFs+ ++s ++k+n++ +++++vC+k+g+++ e k +r+ ++gCka++ ++k +g++ ++ +++ Rmu_sc0002279.1_g000014.1 17 FYNRYAKEAGFSIISHSSATNKDNTQLMRNEYVCYKQGTSKVEGGK-----CKRELLKVGCKARIAAVRKKvSGRYAISVFVEG 95 9**************************************9998877.....99************8666666************ PP FAR1 85 HnHela 90 HnH+l+ Rmu_sc0002279.1_g000014.1 96 HNHPLT 101 ****97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 521 aa Download sequence |
MPILHQEFET IDDVAAFYNR YAKEAGFSII SHSSATNKDN TQLMRNEYVC YKQGTSKVEG 60 GKCKRELLKV GCKARIAAVR KKVSGRYAIS VFVEGHNHPL TSPPRVHLLR SHHRVSKVNT 120 VQSQQLSLVN VQKHTQFEFF GVQADGIENI GCTQRDLYNY GRTCREAKKG HDGDLLYMHF 180 QNEKEKDLSL IYTMESNEEN RVTRCFWADS ISKRAYNFYG DVVIFDTTYN TNRYGMIFAP 240 FTGELLNAML GNAPENAPKM IITDQDLAMT KAISEALPQT FHRYCSWHIL NKFSEKLDAI 300 KYWDCYRDFH SCTWNSSSRE EFDSRWIEIT EKSGLSDNKW LKSIYEICSS WILAHVNHVL 360 SAGMSSSQRA ESQHSFFKNY VSNQNSLVEF MVQIKRGLLH QRHYELEEDH INIDEKPKTV 420 MSLDIEDHMA KVYTRKLFYE VQEQLKERFK YKLELLRENV TPCVFKVVRK NTNTCKSREL 480 IYEKAYDFAS CSSRKIESER LPCRHVLSYL IKIQDVGKLP I |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-71 | FAR1 family protein |