PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0002275.1_g000007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 232aa MW: 26325.7 Da PI: 4.6116 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.2 | 7e-35 | 80 | 163 | 3 | 97 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 ++kdrhski+T++g+RdRR Rlsa++a++f+d+qd+LGfd++sk+i+WL+ +ak+ai +l ++s++++ + ++ Rmu_sc0002275.1_g000007.1 80 ARKDRHSKIYTSKGPRDRRFRLSAQTAIEFYDVQDRLGFDRPSKAIDWLIHKAKAAIEALEDSSTTHQPQH---HQ-------- 152 79*************************************************************77766222...11........ PP TCP 87 sgkaaksaaks 97 g+a++++ k+ Rmu_sc0002275.1_g000007.1 153 GGNAEPETVKT 163 11111111111 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence |
MTSHSQESLY LQMSQQRESK EEEEEEEEEE ENEAQDQPEV AQAQQDYGAS RVESKQPSMN 60 NERYGRIVKV QGGHVIRSIA RKDRHSKIYT SKGPRDRRFR LSAQTAIEFY DVQDRLGFDR 120 PSKAIDWLIH KAKAAIEALE DSSTTHQPQH HQGGNAEPET VKTHQPLDEG TMKNESKEPV 180 LDYAEEALNC APNLSEANFM EMGWFQSLMA WNYNAGDGGE GCSFNSSSVT LL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31070.1 | 1e-39 | TCP family protein |