PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0002236.1_g000010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 280aa MW: 32173.8 Da PI: 8.8617 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.7 | 1.6e-16 | 25 | 107 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +vl +g l +p++f+e+++gk ++ + +l+++ g +W v + ++ sg+++l+kGWk+Fv n+Lk g+ vvF ++g+ +f Rmu_sc0002236.1_g000010.1 25 SVLLRGKLKIPRDFCENFEGKMPQ--QCRLQTLYG-TWHVDV--KNISGEFFLKKGWKKFVVGNRLKLGECVVFDYIGHAKF-- 101 6788899********999988655..699988877.8*****..*********************************98777.. PP EEEEE- CS B3 93 vvkvfr 98 +v ++ Rmu_sc0002236.1_g000010.1 102 YVEIYG 107 888875 PP | |||||||
2 | B3 | 35.4 | 1.9e-11 | 193 | 275 | 7 | 94 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 + +v+k l p++f++++ ++ + +++l+ W+v i ++++ +++GW +F+++n+L+egDf+ F+l+ ++ + Rmu_sc0002236.1_g000010.1 193 QTHVTKGP-LLTPRSFMRNIHKP--K--KVKLQV-GDMAWDVIWI-HPYQQSSRFSGGWLHFASQNRLQEGDFCDFELIsKTiE 269 45555555.666*****888644..4..566554.4588999986.455555569**********************9934455 PP EE..EE CS B3 89 efelvv 94 + ++v Rmu_sc0002236.1_g000010.1 270 VAVMKV 275 554444 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence |
MGSCSRRRED EDSEVPGFYK CVDYSVLLRG KLKIPRDFCE NFEGKMPQQC RLQTLYGTWH 60 VDVKNISGEF FLKKGWKKFV VGNRLKLGEC VVFDYIGHAK FYVEIYGHNH CSKSSKAMRS 120 ERLLDDDSDD HNVVFVDSDS DSEPQNSEIS LESETECPRK SGYGKKLSRR GRAGNSATIR 180 CFGNPCFSVK ICQTHVTKGP LLTPRSFMRN IHKPKKVKLQ VGDMAWDVIW IHPYQQSSRF 240 SGGWLHFASQ NRLQEGDFCD FELISKTIEV AVMKVSIRKM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06220.1 | 1e-11 | B3 family protein |