PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002162.1_g000007.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 472aa MW: 51744.9 Da PI: 8.9879

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002162.1_g000007.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	60	80	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H Rmu_sc0002162.1_g000007.1 60 CEICGKGFQRDQNLQLHRRGH 80 *******************88 PP
2	zf-C2H2	13.5	0.00022	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Rmu_sc0002162.1_g000007.1 134 WKCEKCSKRYAVQSDWKAHSKTC 156 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MAHEEEAINS NGFLQNPVAV LGSNPPPVKK KRNLPGNPDP EAEVIALSPK TLMATNRFLC 60 EICGKGFQRD QNLQLHRRGH NLPWKLKQRT SKEPRKRVYV CPEKSCVHHH PSRALGDLTG 120 IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE YKCDCGTLFS RRDSFITHRA 180 FCDALAEETA RVNAVSNIHN NAMPSNINYH HYMGNNASSL LLGPPNMPQL QFSSIFKPIS 240 SNDTPDTVSQ NTRGLSLWMG QGSNSTHEEM TVNNQHHHHQ LGSVSSSAGS IFGDPNNISV 300 SCSVPPPPSD HYQLNWVLGS NNKLSTSNNA HHQDQLTITS TSAASSLPSL YTHQTPSANM 360 SATALLQKAA QIGATSTDTS SLLGSFGLKC NNNNITSSAS QAVIQVQDGS KVCGLYGTVE 420 NPGAHDHLLH MHQAKRRHIQ SEESAGGGQT RDFLGVGVQT ICHSSPINGY WV

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MAHEEEAINS NGFLQNPVAV LGSNPPPVKK KRNLPGNPDP EAEVIALSPK TLMATNRFLC  60
EICGKGFQRD QNLQLHRRGH NLPWKLKQRT SKEPRKRVYV CPEKSCVHHH PSRALGDLTG  120
IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE YKCDCGTLFS RRDSFITHRA  180
FCDALAEETA RVNAVSNIHN NAMPSNINYH HYMGNNASSL LLGPPNMPQL QFSSIFKPIS  240
SNDTPDTVSQ NTRGLSLWMG QGSNSTHEEM TVNNQHHHHQ LGSVSSSAGS IFGDPNNISV  300
SCSVPPPPSD HYQLNWVLGS NNKLSTSNNA HHQDQLTITS TSAASSLPSL YTHQTPSANM  360
SATALLQKAA QIGATSTDTS SLLGSFGLKC NNNNITSSAS QAVIQVQDGS KVCGLYGTVE  420
NPGAHDHLLH MHQAKRRHIQ SEESAGGGQT RDFLGVGVQT ICHSSPINGY WV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-148	C2H2 family protein