PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002126.1_g000014.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 946aa MW: 103862 Da PI: 5.7653

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002126.1_g000014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.6	7.8e-07	607	627	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f +G C +GdrC F+H Rmu_sc0002126.1_g000014.1 607 PCDNFVNNGSCIRGDRCLFSH 627 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 946 aa Download sequence
MEEPQIEKEK PSETLISLPP HRRRSLKSET HRTLLRILSH CYDVLQHSDQ NVPPELNQDN 60 GSNELGEATT KEGGGNVELV EPDSRKCDDS AAQQELVAVE RCDGKGLRER IGQIEDFFSE 120 EGNEELSGQM DFEDTFGINF GDLEFGPEEM LMDELEQIVK GNDDNAPKLS TGSLVENEGA 180 NDKVELLSNQ EQRDDSQHNA TVRPENADQV VIGEIHNEGE CNECTHSLMK TSALDVEPII 240 QQKAMETSVS SGSAEESLIP ITEVAQFEVP EHFSQKVPEA FVFPLDTDMV GDASKPSQSK 300 SWSHKADDLE GEHEIQPNEN KMEMVCTGNA VNCPNHMNDG DMEEGEISDD DGMDDRSTNM 360 LLHDTARCEE NKVNEFQIVK DVNGQKEHSG KEAIGREFDS NSFLMSIADN VQNPRGVELR 420 ESKTKLIGRP GVVQGKTMEA IKENGYDPSL ESRRIEEKDS GIGRGIGFQE ACTNNQASHE 480 KISQNYEAGS CGTSSEDKVD AGAANKRRRG PPSKEKKQRK KAKERLKRAE MNRKLGVKRL 540 KLHSIEKPKT VVYCRHYIAG RCHEGDKCKF SHDTVPLTKS KPCCYFSRQS CMKGDDCPFD 600 HQLSKYPCDN FVNNGSCIRG DRCLFSHKIL SKEESATAAS KPELVSPTVL GNSRSAQVKI 660 GSPSQKNSHA LPHSTGTHSH NNTELIMART LLEQPAMATK GFSFLSTGKS SLVHSSLSKQ 720 GVLAPDRSTG AKAGNPMQQS PSSFVPNTKE NIMTTPPVVT PKGINFLSFG KASPDGSSGK 780 NQDHHHSNRS VSETVQNFNG VPKVIQPAQP KAADFLSIGK APVANSSSGN PFSLTSSSDN 840 GNSRHFGEGK SAFDKPQNSN AISSRLQPSP LTSGQSSDYT ASRFKDPRNQ RSLFSTLAFA 900 EKYESKKTNQ SIGSTFTQVD RETKQNDSGK AFNILDFLST IGSTTK

Sequence ? help Back to Top

Protein Sequence Length: 946 aa Download sequence

MEEPQIEKEK PSETLISLPP HRRRSLKSET HRTLLRILSH CYDVLQHSDQ NVPPELNQDN  60
GSNELGEATT KEGGGNVELV EPDSRKCDDS AAQQELVAVE RCDGKGLRER IGQIEDFFSE  120
EGNEELSGQM DFEDTFGINF GDLEFGPEEM LMDELEQIVK GNDDNAPKLS TGSLVENEGA  180
NDKVELLSNQ EQRDDSQHNA TVRPENADQV VIGEIHNEGE CNECTHSLMK TSALDVEPII  240
QQKAMETSVS SGSAEESLIP ITEVAQFEVP EHFSQKVPEA FVFPLDTDMV GDASKPSQSK  300
SWSHKADDLE GEHEIQPNEN KMEMVCTGNA VNCPNHMNDG DMEEGEISDD DGMDDRSTNM  360
LLHDTARCEE NKVNEFQIVK DVNGQKEHSG KEAIGREFDS NSFLMSIADN VQNPRGVELR  420
ESKTKLIGRP GVVQGKTMEA IKENGYDPSL ESRRIEEKDS GIGRGIGFQE ACTNNQASHE  480
KISQNYEAGS CGTSSEDKVD AGAANKRRRG PPSKEKKQRK KAKERLKRAE MNRKLGVKRL  540
KLHSIEKPKT VVYCRHYIAG RCHEGDKCKF SHDTVPLTKS KPCCYFSRQS CMKGDDCPFD  600
HQLSKYPCDN FVNNGSCIRG DRCLFSHKIL SKEESATAAS KPELVSPTVL GNSRSAQVKI  660
GSPSQKNSHA LPHSTGTHSH NNTELIMART LLEQPAMATK GFSFLSTGKS SLVHSSLSKQ  720
GVLAPDRSTG AKAGNPMQQS PSSFVPNTKE NIMTTPPVVT PKGINFLSFG KASPDGSSGK  780
NQDHHHSNRS VSETVQNFNG VPKVIQPAQP KAADFLSIGK APVANSSSGN PFSLTSSSDN  840
GNSRHFGEGK SAFDKPQNSN AISSRLQPSP LTSGQSSDYT ASRFKDPRNQ RSLFSTLAFA  900
EKYESKKTNQ SIGSTFTQVD RETKQNDSGK AFNILDFLST IGSTTK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	516	527	KKQRKKAKERLK
2	519	541	RKKAKERLKRAEMNRKLGVKRLK