PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002119.1_g000023.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 377aa MW: 44019.8 Da PI: 7.3606

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002119.1_g000023.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.5	9.9e-32	82	184	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v Rmu_sc0002119.1_g000023.1 82 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFQDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIV 165 89*************************966778999****************************************** PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 F+++ r++ l++ + r+ Rmu_sc0002119.1_g000023.1 166 SFERSVRDSNVLYIDWKRR 184 *8877777677777665 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MEYFVQGDQK GYSDKEEDQE EEEEEKNHII NSKYLPPSYN YGSSSSSSQT PEAINFMDLS 60 LRNAKDNNNN DWPPNSEREH MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSTNEKGLL 120 LNFQDRTGKP WRFRYSYWNS SQSYVMTKGW SRFVKDKKLD AGDIVSFERS VRDSNVLYID 180 WKRRPPPPLP PNQTSLWGGG GRFYSLQRPP LMSMPLRHHE HFHYNIHHPY HHQYQYHQMN 240 PYQLQQQQQQ QQQQYYHHRG ISPAVVIDSV PLVQHHHHQH GKNMSPTTNK RLRLFGVNME 300 YSPMQEDEPE QCQILSSTVA SLSPHQQHHH HHHLPSSSLS QPLELRLPNY AAPLAGSADQ 360 LLSEKGKSTS LSFYLDP

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MEYFVQGDQK GYSDKEEDQE EEEEEKNHII NSKYLPPSYN YGSSSSSSQT PEAINFMDLS  60
LRNAKDNNNN DWPPNSEREH MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSTNEKGLL  120
LNFQDRTGKP WRFRYSYWNS SQSYVMTKGW SRFVKDKKLD AGDIVSFERS VRDSNVLYID  180
WKRRPPPPLP PNQTSLWGGG GRFYSLQRPP LMSMPLRHHE HFHYNIHHPY HHQYQYHQMN  240
PYQLQQQQQQ QQQQYYHHRG ISPAVVIDSV PLVQHHHHQH GKNMSPTTNK RLRLFGVNME  300
YSPMQEDEPE QCQILSSTVA SLSPHQQHHH HHHLPSSSLS QPLELRLPNY AAPLAGSADQ  360
LLSEKGKSTS LSFYLDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61970.1	1e-63	B3 family protein